View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_59 (Length: 289)
Name: NF2700_low_59
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_59 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 227084 - 226814
Alignment:
| Q |
1 |
gaaatagtggtgaaaatgtgtgacaaagttgttaactcagaaggtaaagttgttgatttgaatgaacaacaaagaaatagcatcaatgaagtaatcaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
227084 |
gaaatagtggtgaaaatgtgtgacaaagttgttaactcagaaggtaaagttgttgatttgaacgaacaacaaagaaatagcatcaatgaagtaatcaatg |
226985 |
T |
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| Q |
101 |
gttttgcttccgatgcactgagaacactctgcgtagccttcaaggatattgaagcgtcttctgaagatggtaacagcattccagaggatgaatatacttt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
226984 |
gttttgcttccgatgcactgagaacactctgtgtagccttcaaggatattgaagcgtcttctgaagatggcaacagcattccggaggatgaatatacttt |
226885 |
T |
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| Q |
201 |
aattgctattattgggatcaaggatccagtgaggcctggagttaaagaagctgttaagacttgtttggatg |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226884 |
aattgctattattgggatcaaggatccagtgaggcctggagttaaagaagctgttaagacttgtttggatg |
226814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 14590294 - 14590564
Alignment:
| Q |
1 |
gaaatagtggtgaaaatgtgtgacaaagttgttaactcagaaggtaaagttgttgatttgaatgaacaacaaagaaatagcatcaatgaagtaatcaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14590294 |
gaaatagtggtgaaaatgtgtgacaaagttgttaactcagaaggtaaagttgttgatttgaacgaacaacaaagaaatagcatcaatgaagtaatcaatg |
14590393 |
T |
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| Q |
101 |
gttttgcttccgatgcactgagaacactctgcgtagccttcaaggatattgaagcgtcttctgaagatggtaacagcattccagaggatgaatatacttt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
14590394 |
gttttgcttccgatgcactgagaacactctgtgtagccttcaaggatattgaagcgtcttctgaagatggcaacagcattccggaggatgaatatacttt |
14590493 |
T |
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| Q |
201 |
aattgctattattgggatcaaggatccagtgaggcctggagttaaagaagctgttaagacttgtttggatg |
271 |
Q |
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| T |
14590494 |
aattgctattattgggatcaaggatccagtgaggcctggagttaaagaagctgttaagacttgtttggatg |
14590564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 187874 - 187951
Alignment:
| Q |
1 |
gaaatagtggtgaaaatgtgtgacaaagttgttaactcagaaggtaaagttgttgatttgaatgaacaacaaagaaat |
78 |
Q |
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||||||||||| ||||||||||| ||||||||||| || |||| |||||||| ||||| |||||||||||||||||| |
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| T |
187874 |
gaaatagtggttaaaatgtgtgagaaagttgttaatgcataaggcaaagttgtcgattttaatgaacaacaaagaaat |
187951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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