View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_64 (Length: 282)
Name: NF2700_low_64
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 36809290 - 36809039
Alignment:
| Q |
16 |
aatatcaaggaaattaccataaaactacataccatagattaaacagaataggttttctataaacatttaaaaccttgttcgcctttgatgtcaagttatg |
115 |
Q |
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| T |
36809290 |
aatatcaaggaaattaccataaaactacataccatagattaaacagaataggttttctataaacatttaaaaccttgttcgcctttgatgtcaagttatg |
36809191 |
T |
|
| Q |
116 |
aaaatttgtgnnnnnnn-atctcattgggcgaactaaagagactgtgttcagcttcttttgtcatatgatatgagttgtgaactttttagtagataaata |
214 |
Q |
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| T |
36809190 |
aaaatttgtgttttttttatctcattgggggaactaaagagactgtgttcagcttcttttgtcatatgatatgagttgcgaactttttagtagctaaata |
36809091 |
T |
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| Q |
215 |
tattaaatagcttaccaacatcagggagaccttcctttcttataatatatgt |
266 |
Q |
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| T |
36809090 |
tagtaaatagcttaccaacatcagggagaccttcctttcttataatatatgt |
36809039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 48278724 - 48278676
Alignment:
| Q |
218 |
taaatagcttaccaacatcagggagaccttcctttcttataatatatgt |
266 |
Q |
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| T |
48278724 |
taaatcgcttaccaacatcagggagaccttccttttttataatatatgt |
48278676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 24076402 - 24076430
Alignment:
| Q |
225 |
cttaccaacatcagggagaccttcctttc |
253 |
Q |
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| T |
24076402 |
cttaccaacatcagggagaccttcctttc |
24076430 |
T |
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