View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700_low_66 (Length: 275)

Name: NF2700_low_66
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700_low_66
NF2700_low_66
[»] chr6 (2 HSPs)
chr6 (1-256)||(3797756-3798012)
chr6 (3-125)||(3805760-3805885)
[»] chr4 (1 HSPs)
chr4 (158-256)||(51263852-51263950)
[»] chr8 (4 HSPs)
chr8 (158-256)||(43322245-43322343)
chr8 (158-256)||(24601391-24601489)
chr8 (158-243)||(7122915-7123000)
chr8 (102-143)||(28797069-28797110)
[»] chr2 (1 HSPs)
chr2 (200-256)||(27259638-27259694)
[»] chr5 (1 HSPs)
chr5 (101-153)||(6296848-6296900)


Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 3798012 - 3797756
Alignment:
Q  1 gcggttggaaatctaaaaaagtctcaacataataataaaacaa-taagtatacgagaactactggatttttcaaaatgaaaatttgaataaataaattat 99  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3798012 gcggttgaaaatctaaaaaagtctcaacataataataaaacaaataagtatacgagaactactggatttttcaaaatgaaaatttgaataaataaattat 3797913  T
Q  100 agggggttggatagctcaattgatttgaactaagggttaaggagctcgaggttcatggttccatggatctgccataatagcatttgaccaccgttttgaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  3797912 agggggttggatagctcaattgatttgaactaagggttaaggagctcgaggttcagggttccatggatctgccataatagcgtttgaccaccgttttgaa 3797813  T
Q  200 atcgtaacatcttgctgagagaacctaacctcacacttggtctcactatgtcctagc 256  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3797812 atcgtaacatcttgctgagagaacctaacctcacacttggtctcgctatgtcctagc 3797756  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 3805885 - 3805760
Alignment:
Q  3 ggttggaaatctaa-aaaagtctcaacataataataaaac-aataagtatacgagaactactgga-tttttcaaaatgaaaa-tttgaataaataaatta 98  Q
    ||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||| |||||||||||||||| ||||||||||  |||||    
T  3805885 ggttggatatctaacaaaagtctcaacataataataaaacaaataagtatacgagaataactggattttttcaaaatgaaaattttgaataaa-gaatta 3805787  T
Q  99 tagggggttggatagctcaattgattt 125  Q
    ||||||||||||||| |||||| ||||    
T  3805786 tagggggttggatagttcaattcattt 3805760  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 51263852 - 51263950
Alignment:
Q  158 ttccatggatctgccataatagcatttgaccaccgttttgaaatcgtaacatcttgctgagagaacctaacctcacacttggtctcactatgtcctagc 256  Q
    ||||||||||||||| |||||   |||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||  |||||||||||||||||    
T  51263852 ttccatggatctgccctaatattgtttgaccaccgttttggaatcgtaacatctggctgagagtacctaacctcacacttattctcactatgtcctagc 51263950  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 43322245 - 43322343
Alignment:
Q  158 ttccatggatctgccataatagcatttgaccaccgttttgaaatcgtaacatcttgctgagagaacctaacctcacacttggtctcactatgtcctagc 256  Q
    ||||| ||||||||| ||||||  |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||  |||||||||||    
T  43322245 ttccaaggatctgccctaatagtgtttgaccaccgttttggaatcgtagcatctggctgagagaacctaacctcacacttgttctcgttatgtcctagc 43322343  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 24601489 - 24601391
Alignment:
Q  158 ttccatggatctgccataatagcatttgaccaccgttttgaaatcgtaacatcttgctgagagaacctaacctcacacttggtctcactatgtcctagc 256  Q
    |||||||||| |||  ||||| | |||||||||||||||| |||| ||||||||  ||||||||||||| |||||||| || |||  ||||||||||||    
T  24601489 ttccatggatatgctctaataacgtttgaccaccgttttggaatcataacatctgactgagagaacctaccctcacacctgttcttgctatgtcctagc 24601391  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 7123000 - 7122915
Alignment:
Q  158 ttccatggatctgccataatagcatttgaccaccgttttgaaatcgtaacatcttgctgagagaacctaacctcacacttggtctc 243  Q
    ||||| |||| |||| ||||||| ||||||||||||||   ||| ||||||||  | ||||| ||| |||||||||||||| ||||    
T  7123000 ttccacggatatgccctaatagcgtttgaccaccgtttctgaattgtaacatccggttgagaaaacttaacctcacacttgttctc 7122915  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 28797069 - 28797110
Alignment:
Q  102 ggggttggatagctcaattgatttgaactaagggttaaggag 143  Q
    ||||||||||||||| |||| |||||||||| ||||||||||    
T  28797069 ggggttggatagctcgattggtttgaactaatggttaaggag 28797110  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 27259694 - 27259638
Alignment:
Q  200 atcgtaacatcttgctgagagaacctaacctcacacttggtctcactatgtcctagc 256  Q
    |||| ||||||| |||||||||||||||||||||||||| |||  ||||| ||||||    
T  27259694 atcgcaacatctggctgagagaacctaacctcacacttgttcttgctatgccctagc 27259638  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 6296848 - 6296900
Alignment:
Q  101 gggggttggatagctcaattgatttgaactaagggttaaggagctcgaggttc 153  Q
    ||||||||| ||||||||||| ||||| ||||||| ||||||| | |||||||    
T  6296848 gggggttgggtagctcaattggtttgagctaagggataaggagttggaggttc 6296900  T

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