View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_68 (Length: 270)
Name: NF2700_low_68
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 32207994 - 32208236
Alignment:
| Q |
22 |
gcaagatactttagttgctagctcggtggtaagagcttagtcgtgtatcctcaaggtactcatttcgaatcccctcggtgattgtcgaaaaatgatcatt |
121 |
Q |
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| T |
32207994 |
gcaaaatactttagttgctagctcggtggtaagagcttagtcttgtatcctcaaggtactcatttcgaatcccctcggtgattgtcgtaaaatgaccatc |
32208093 |
T |
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| Q |
122 |
tatgtaactttaattaatnnnnnnnnctttatgaacaagata-tataaatctaactattactagagagtaatagaactttcaatcgagtaaaaaggtatt |
220 |
Q |
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| T |
32208094 |
agtgtaactttaattaataaaaaaaactttatgaacaagataatataaatctaactatgactagagagtaatagaactttcaatcgagtaaaaaggtatt |
32208193 |
T |
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| Q |
221 |
tttggtacataagattaaaagagtgagagattgacctttgctt |
263 |
Q |
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| T |
32208194 |
tttggtacataagattaaaagagtgagagattgacctttgctt |
32208236 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 36198977 - 36198893
Alignment:
| Q |
37 |
tgctagctcggtggtaagagcttagtcgtgtatcctcaaggtactcatttcgaatcccctcggtgattgtcgaaaaatgatcatt |
121 |
Q |
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| T |
36198977 |
tgctagcttagtggtaagagcttagccttgtaacctcaaggtactgagttcaaatcccctcggggatggttgtaaaatgaccatt |
36198893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 50892223 - 50892285
Alignment:
| Q |
37 |
tgctagctcggtggtaagagcttagtcgtgtatcctcaaggtactcatttcgaatcccctcgg |
99 |
Q |
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| T |
50892223 |
tgctagctcagtggtaagagcttagccttgtaacctcaaggtgctgagttctaatcccctcgg |
50892285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 42184014 - 42183973
Alignment:
| Q |
40 |
tagctcggtggtaagagcttagtcgtgtatcctcaaggtact |
81 |
Q |
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| T |
42184014 |
tagctcagtggtaagagcttagtcttgtagcctcaaggtact |
42183973 |
T |
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