View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_7 (Length: 621)
Name: NF2700_low_7
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 222 - 487
Target Start/End: Complemental strand, 26746522 - 26746262
Alignment:
| Q |
222 |
tcaattagattagatcatgaaaataattttttcgccattcgcttcattcaattcagcaacctaataatacttctctcattccttttgattacttctatgc |
321 |
Q |
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| T |
26746522 |
tcaattagattagatcatgaaaataatcttttcgccattcgcttcattcaattcagcaacctaataatacttctctcattccttttgattacttctatgc |
26746423 |
T |
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| Q |
322 |
aacactcaattttatgttatactcttttcctccnnnnnnnnnnnnnnacttcatttgtgttataggctggtcctcatttttcttcttcaactaccatgct |
421 |
Q |
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| T |
26746422 |
aacactcaattttatgttatactcttttcttcc-----attttttttacttcatttatgttataggctggtcctcatttttcttcttcaactactatgct |
26746328 |
T |
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| Q |
422 |
tattattggtttctattgacgtttatatgattgtttcgaacatatagaggaatttaatcttcatat |
487 |
Q |
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| T |
26746327 |
tattattggtttctattgccgtttatatgattgtttcgaacatataaaggaatttaatcttcatat |
26746262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 503 - 611
Target Start/End: Complemental strand, 26743858 - 26743750
Alignment:
| Q |
503 |
tatgtttagaagtaaagcaagtaagaccgaagagacaagaatatttcctgttacgtttattctttgcttcttctatttaactataaagaatacaatgccc |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26743858 |
tatgtttagaagtaaagcaagtaagaccgaagagacaagaatatttcctgttacgtttattctttgcttcttctatttaactataaagaatacaatgccc |
26743759 |
T |
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| Q |
603 |
tttgctact |
611 |
Q |
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|||| |||| |
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| T |
26743758 |
tttggtact |
26743750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 26746704 - 26746618
Alignment:
| Q |
18 |
acattcaaccattgtcatcgctacattttcagaaaaatattgcattaaattaaacactcaaagtcatacactcttacaccatccctt |
104 |
Q |
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|||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26746704 |
acattcaaccattgtcatcgctgcatttccaaaaaaatactgcattaaattaaacactcaaagtcatacactcttactccatccctt |
26746618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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