View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2700_low_71 (Length: 256)
Name: NF2700_low_71
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_71 |
 | |
|
| [»] chr7 (14 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 4864075 - 4863824
Alignment:
| Q |
5 |
actgccagaagttatggaatggatgccacagaggattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacattttt |
104 |
Q |
| |
|
||||| |||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4864075 |
actgcaagaagttacggacagtatgccacagaggagtacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacattttt |
4863976 |
T |
|
| Q |
105 |
gtgagtttgatccgaatataacaaataaaggtgatagagcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4863975 |
gtgagtttgatccgaatataacaaataaaggtgatagagcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggag |
4863876 |
T |
|
| Q |
205 |
cggttctcgtatggttcctgttcataaggattatactgtgtctataaactct |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4863875 |
cggttctcgtatggttcctgttcataaggattatactgtgtctataaactct |
4863824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 4631080 - 4630847
Alignment:
| Q |
5 |
actgccagaagttatggaatggatgccacagaggattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacattttt |
104 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
4631080 |
actgcgagaagttatggaatggatgcaacaaaggattacaatgtaacttggaattttgaagttgattcttcttttacttatatggtaagattacattttt |
4630981 |
T |
|
| Q |
105 |
gtgagtttgatccgaatataacaaataaaggtgatagagcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggag |
204 |
Q |
| |
|
|||||||||| || |||| | || |||||||||||| ||||||||||||||||| ||| | | | ||||||||||| |||||||||||| ||||||| |
|
|
| T |
4630980 |
gtgagtttgaaatgacgataagagatcaaggtgatagagtctttcagattttcatagctaacattctagctgaggaaaaagctgatgtgataaggtggag |
4630881 |
T |
|
| Q |
205 |
cggttctcgtatggttcctgttcataaggattat |
238 |
Q |
| |
|
||| |||||||||||||| ||||||||||||| |
|
|
| T |
4630880 |
tggtgctcgtatggttcctactcataaggattat |
4630847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 238
Target Start/End: Complemental strand, 4643791 - 4643591
Alignment:
| Q |
38 |
gattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacatttttgtgagtttgatccgaatataacaaataaaggtg |
137 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4643791 |
gatttcaatgtaacttggaattttgaggttgattctggttttacttatatggtaaggttacatttttgtgagtttgatccggatataacaaataaaggtg |
4643692 |
T |
|
| Q |
138 |
atagagcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggatta |
237 |
Q |
| |
|
|||||| ||||||||| ||||||| ||| | | ||| ||| ||||| || ||||||||| ||||||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
4643691 |
atagagtctttcagatattcatagataacactttggttgaagaaaaggcggatgtgatagggtggagtggtgctcgtttggttcctgttcataaggatta |
4643592 |
T |
|
| Q |
238 |
t |
238 |
Q |
| |
|
| |
|
|
| T |
4643591 |
t |
4643591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 4637010 - 4636777
Alignment:
| Q |
5 |
actgccagaagttatggaatggatgccacagaggattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacattttt |
104 |
Q |
| |
|
||||| |||||||| |||||| ||| ||| ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4637010 |
actgcaagaagttacggaatgtatgagacaaaggattataatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacattttt |
4636911 |
T |
|
| Q |
105 |
gtgagtttgatccgaatataacaaataaaggtgatagagcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggag |
204 |
Q |
| |
|
||||||||||| | |||| | ||||||||||||||| ||||||||| ||||||| ||| | | ||| ||| ||||| || ||||||||| ||||||| |
|
|
| T |
4636910 |
gtgagtttgattggcatatcaactataaaggtgatagagtctttcagatattcatagataacactttggttgaagaaaaggcggatgtgatagggtggag |
4636811 |
T |
|
| Q |
205 |
cggttctcgtatggttcctgttcataaggattat |
238 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
4636810 |
tggtgctcgtatggttcctgttcataaggattat |
4636777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 4783777 - 4784010
Alignment:
| Q |
5 |
actgccagaagttatggaatggatgccacagaggattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacattttt |
104 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4783777 |
actgcaagaagttatggaatgtatgagacagaggattacaatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacattttt |
4783876 |
T |
|
| Q |
105 |
gtgagtttgatccgaatataacaaataaaggtgatagagcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggag |
204 |
Q |
| |
|
||||||||||| | |||| | | | | ||||||||| |||||||||||||||| | ||||| ||||||| | |||||||||||| ||||||| |
|
|
| T |
4783877 |
gtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttcatagatgatagtttggctgaacatgctgctgatgtgataaggtggag |
4783976 |
T |
|
| Q |
205 |
cggttctcgtatggttcctgttcataaggattat |
238 |
Q |
| |
|
||| ||| | ||||||||||||||||||||||| |
|
|
| T |
4783977 |
tggtgctcctttggttcctgttcataaggattat |
4784010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 4672790 - 4672591
Alignment:
| Q |
44 |
aatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacatttttgtgagtttgatccgaatataacaaataaaggtgatagag |
143 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| | ||| | |||| ||||||||||| |
|
|
| T |
4672790 |
aatgtaacttggaattttgaggttgattcttctttcacttatatggtaaggttacatttttgtgagtttgacaggcttatcattaatacaggtgatagag |
4672691 |
T |
|
| Q |
144 |
cctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggattatactgt |
243 |
Q |
| |
|
||||||||||||| |||| ||| | | |||||||||||| |||||||| ||| | ||||| ||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
4672690 |
cctttcagatttttatagctaacactctggctgaggaaagagctgatgttataagttggagtggtgctcgtatggttcctgttcataaggattatgctgt |
4672591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 4663144 - 4662911
Alignment:
| Q |
5 |
actgccagaagttatggaatggatgccacagaggattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacattttt |
104 |
Q |
| |
|
||||| |||| |||||||| | ||| ||||||||||| |||||||||||||||||||| ||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
4663144 |
actgcaagaaattatggaaagtatgtgacagaggattataatgtaacttggaattttgaggttgattcttcttttacatacatggtaaggttacattttt |
4663045 |
T |
|
| Q |
105 |
gtgagtttgatccgaatataacaaataaaggtgatagagcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggag |
204 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||| ||||||||||| |||| | ||| | | | ||| ||| || ||||||||| ||||||| |
|
|
| T |
4663044 |
gtgagtttgatccgaatatcataaataaaggtgatagaatgtttcagatttttatagatgataatttagttgaagaattagccgatgtgataaggtggag |
4662945 |
T |
|
| Q |
205 |
cggttctcgtatggttcctgttcataaggattat |
238 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
4662944 |
taatggtcgtatggttcctgttcataaggattat |
4662911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 4816206 - 4816439
Alignment:
| Q |
5 |
actgccagaagttatggaatggatgccacagaggattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacattttt |
104 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4816206 |
actgcaagaagttatggaatgtatgagacagaggattacaatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacattttt |
4816305 |
T |
|
| Q |
105 |
gtgagtttgatccgaatataacaaataaaggtgatagagcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggag |
204 |
Q |
| |
|
||||||||||| | |||| | | | | ||||||||| |||||||||||||||| | ||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
4816306 |
gtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttcatagatgatagtttggctgaactttttgctgatgtgatatggtggag |
4816405 |
T |
|
| Q |
205 |
cggttctcgtatggttcctgttcataaggattat |
238 |
Q |
| |
|
||| ||| | | ||||||||||||||||||||| |
|
|
| T |
4816406 |
tggtgctccttttgttcctgttcataaggattat |
4816439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 4697132 - 4697376
Alignment:
| Q |
5 |
actgccagaagttatggaatggatgccacagaggattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacattttt |
104 |
Q |
| |
|
||||| |||||| |||| |||||| |||||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
4697132 |
actgcaagaagtcgtggattggatgagacagaggatttcaatgtaacttggaatttcgaagttgatgttggttttacttatatggtaaggttgcattttt |
4697231 |
T |
|
| Q |
105 |
gtgagtttgatccgaatataacaaataaaggtgatagagcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggag |
204 |
Q |
| |
|
|||||||||||| | |||| | ||||| ||||||||||| |||||| || ||||||| ||||| | |||| ||| ||||||||||||||| ||||| |
|
|
| T |
4697232 |
gtgagtttgatcagcatatcaaaaatataggtgatagagtctttcaaatattcatagctaatactttggcggagataaacgctgatgtgatttcttggag |
4697331 |
T |
|
| Q |
205 |
cggttctcgtatggttcctgttcataaggattatactgtgtctat |
249 |
Q |
| |
|
| ||| |||||||||||||||||| |||||| |||||||||| |
|
|
| T |
4697332 |
tactactcctatggttcctgttcataaagattatgctgtgtctat |
4697376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 4712013 - 4712165
Alignment:
| Q |
1 |
ctttactgccagaagttatggaatggatgccacagaggattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacat |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4712013 |
ctttactgcaagaagttatggaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacat |
4712112 |
T |
|
| Q |
101 |
ttttgtgagtttgatccgaatataacaaataaaggtgatagagcctttcagat |
153 |
Q |
| |
|
|||||||||||||||| | ||| | |||||||||||||||| |||||||| |
|
|
| T |
4712113 |
ttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagat |
4712165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 177
Target Start/End: Complemental strand, 4667091 - 4666919
Alignment:
| Q |
5 |
actgccagaagttatggaatggatgccacagaggattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacattttt |
104 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| |||| ||||| || ||||||||| |||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
4667091 |
actgcaagaagttatggaatggatgccaaagagaattataatgtgacatggaattttaaagttgattctatttttacttatatggtaaggttgcattttt |
4666992 |
T |
|
| Q |
105 |
gtgagtttgatccgaatataacaaataaaggtgatagagcctttcagattttcatagttaatagtatggctga |
177 |
Q |
| |
|
||||||||||| | |||| | ||| ||||||||||| ||||||||||| |||| | ||| ||||||||| |
|
|
| T |
4666991 |
gtgagtttgattggcatatcaagaatccaggtgatagagtttttcagatttttatagatgatattatggctga |
4666919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 4845957 - 4846105
Alignment:
| Q |
5 |
actgccagaagttatggaatggatgccacagaggattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacattttt |
104 |
Q |
| |
|
||||| ||||||||||||| | ||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4845957 |
actgcaagaagttatggaaagtatgtgacagaggattataatgtaacttggaatttcgaagttgattctagttttacttatatggtaaggttacattttt |
4846056 |
T |
|
| Q |
105 |
gtgagtttgatccgaatataacaaataaaggtgatagagcctttcagat |
153 |
Q |
| |
|
|||||||||||| | || | |||||||||||||||| |||||||| |
|
|
| T |
4846057 |
gtgagtttgatctgcttaccaagaataaaggtgatagagtttttcagat |
4846105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 4653673 - 4653563
Alignment:
| Q |
5 |
actgccagaagttatggaatggatgccacagaggattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacattttt |
104 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| || | |||||||||||||| ||||||||||||| |
|
|
| T |
4653673 |
actgcgagaagttatggaatgaatgtcacagaggattacaatgtaacttggaatttcgaagttgactcaacatttacttatatggtcaggttacattttt |
4653574 |
T |
|
| Q |
105 |
gtgagtttgat |
115 |
Q |
| |
|
|||| |||||| |
|
|
| T |
4653573 |
gtgaatttgat |
4653563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 4647625 - 4647569
Alignment:
| Q |
57 |
attttgaagttgattctaattttacttatatggtaaggttacatttttgtgagtttgat |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4647625 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgat |
4647569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 18925684 - 18925917
Alignment:
| Q |
5 |
actgccagaagttatggaatggatgccacagaggattacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacattttt |
104 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||| |
|
|
| T |
18925684 |
actgcaagaagttatggaatggatgcgacaaaggattataatgtaacttggaattttgaagttgattctgcctttacttatttggtaagattgcattttt |
18925783 |
T |
|
| Q |
105 |
gtgagtttgatccgaatataacaaataaaggtgatagagcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggag |
204 |
Q |
| |
|
| ||||||||| | |||||| ||| |||||||||||| ||||||||||| |||| | ||| | ||||||| ||| ||||||||||| | ||||| |
|
|
| T |
18925784 |
gcgagtttgattggcatataaagaatcaaggtgatagagtttttcagatttttatagatgataatttggctgaacgaaatgctgatgtgattcattggag |
18925883 |
T |
|
| Q |
205 |
cggttctcgtatggttcctgttcataaggattat |
238 |
Q |
| |
|
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| T |
18925884 |
tggtgctcgtatggttcctgttcataaggattat |
18925917 |
T |
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