View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_76 (Length: 246)
Name: NF2700_low_76
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_76 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 37082444 - 37082552
Alignment:
| Q |
113 |
atgttgatcgacgaacgggtaggcaatctagagacgataaatcaatttaattttttatgatctatgcacgggtagacaatcatggagaagatcaatcaat |
212 |
Q |
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| T |
37082444 |
atgttgatctacgaacgggtaggcaatctagagacgataaatcaatttaattttttatgatctatgcacgggaagacaatcatggagaagatcaatcaat |
37082543 |
T |
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| Q |
213 |
tttattttt |
221 |
Q |
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| T |
37082544 |
ttaattttt |
37082552 |
T |
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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 37082379 - 37082552
Alignment:
| Q |
1 |
gggcgacgagagcat-aaagaggggtgttttccaacccccttccacctgttctaatgttttgtca------atctacacatctgataggcaatctagaga |
93 |
Q |
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| T |
37082379 |
gggcgacgagagcatcaaagaggggtgttttccaacccccttccacttgttataatgttttgtcaatgttgatctac-gaacgggtaggcaatctagaga |
37082477 |
T |
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| Q |
94 |
tgataaatcattttaatttatgttgatcgacgaacgggtaggcaatc-tagagacgataaatcaatttaattttt |
167 |
Q |
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| T |
37082478 |
cgataaatcaatttaattttttatgatctatgcacgggaagacaatcatggagaagatcaatcaatttaattttt |
37082552 |
T |
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