View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_77 (Length: 246)
Name: NF2700_low_77
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_77 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 31099973 - 31100218
Alignment:
| Q |
1 |
tatatgttatataatattaattaatgtatgctgtgaatatcaacctctgatatcttcttctgaagttcactgtgtgtatattatattggcattcaaatac |
100 |
Q |
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| T |
31099973 |
tatatgttatataatattaattaatgtatgctgtgaatatcaacctctgatatcttcttctgaagttcactgtgtgtatattatattggcattcaaatac |
31100072 |
T |
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| Q |
101 |
catctttttgggaagtaaatgatttctagtattcaaagttgatacgtatctgaatattcataatcactcttctctcttgctgctttatattttgatatat |
200 |
Q |
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| T |
31100073 |
catctttttgggaagtaaatgatttctagtattcaaagttgatacgtatctgaatattcataatcactcttctctcttgctgctttatattttgatatat |
31100172 |
T |
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| Q |
201 |
atgtttctcacttttctttactacactgtgttgctaaaactcctat |
246 |
Q |
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| T |
31100173 |
atgtttctcacttttctttactacactgtgttgctaaaactcctat |
31100218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 31141378 - 31141133
Alignment:
| Q |
1 |
tatatgttatataatattaattaatgtatgctgtgaatatcaacctctgatatcttcttctgaagttcactgtgtgtatattatattggcattcaaatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141378 |
tatatgttatataatattaattaatgtatgctgtgaatatcaacctctgatatcttcttctgaagttcactgtgtgtatattatattggcattcaaatac |
31141279 |
T |
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| Q |
101 |
catctttttgggaagtaaatgatttctagtattcaaagttgatacgtatctgaatattcataatcactcttctctcttgctgctttatattttgatatat |
200 |
Q |
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| T |
31141278 |
catctttttgggaagtaaatgatttctagtattcaaagttgatacgtatctgaatattcataatcactcttctctcttgctgctttatattttgatatat |
31141179 |
T |
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| Q |
201 |
atgtttctcacttttctttactacactgtgttgctaaaactcctat |
246 |
Q |
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| T |
31141178 |
atgtttctcacttttctttactacactgtgttgctaaaactcctat |
31141133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 31147367 - 31147305
Alignment:
| Q |
100 |
ccatctttttgggaagtaaatgatttctagtattc-aaagttgatacgtatctgaatattcat |
161 |
Q |
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| T |
31147367 |
ccatctttttgggaagtaaatgatttctagtattcaaaagttgatacgtatctgaatattcat |
31147305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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