View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700_low_8 (Length: 619)

Name: NF2700_low_8
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700_low_8
NF2700_low_8
[»] chr8 (17 HSPs)
chr8 (151-604)||(5603162-5603615)
chr8 (151-604)||(5631755-5632208)
chr8 (192-497)||(5649671-5649968)
chr8 (1-89)||(5603012-5603100)
chr8 (1-89)||(5632270-5632358)
chr8 (1-83)||(5602750-5602832)
chr8 (1-83)||(5638110-5638192)
chr8 (1-83)||(5638374-5638456)
chr8 (1-85)||(5602164-5602249)
chr8 (13-83)||(5602500-5602570)
chr8 (1-83)||(5651308-5651390)
chr8 (310-403)||(13168821-13168912)
chr8 (246-304)||(5550051-5550109)
chr8 (246-304)||(5607820-5607878)
chr8 (246-304)||(5627492-5627550)
chr8 (246-304)||(14404979-14405037)
chr8 (246-304)||(6310251-6310309)
[»] scaffold0363 (1 HSPs)
scaffold0363 (246-304)||(13816-13874)


Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 151 - 604
Target Start/End: Original strand, 5603162 - 5603615
Alignment:
Q  151 caagttttcttttttggcagaacaaataaagtagtgtatattatattcatgaagatctcatttggtcaagcctaacaaaaaactcatgtctatataagtt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5603162 caagttttcttttttggcagaacaaataaagtagtgtatattatattcatgaagatctcatttagtcaagcctaacaaaaaactcatgtctatataagtt 5603261  T
Q  251 ctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttcgtatgatccttccacaactcttttctgtttgaattttggaggttca 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  5603262 ctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttcttatgatccttccacaactcttttctgtttgaatttcggaggttca 5603361  T
Q  351 ggtttgaataaagtgctatatcatcaatttcaaatttgagagatcttggaaagnnnnnnnccccatcgctaactgtcttatgcatctttccgataaacat 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  5603362 ggtttgaataaagtgctatatcatcaatttcaaatttgagagatcttggaaagtttttttccccatcgctaactgtcttatgcatctttccgataaacat 5603461  T
Q  451 cttgacttctgtcatagaagaacagttcaataatgatcaaacttgaatttatagtaattcgtgtttattcattcttttgcaagtactgattaacacaatt 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5603462 cttgacttctgtcatagaagaacagttcaataatgatcaaacttgaatttatagtaattcgtgtttattcattcttttgcaagtactgattaacacaatt 5603561  T
Q  551 tcaaagttttgcactatgattaatgtgatttttaattcatctttagttattctt 604  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5603562 tcaaagttttgcactatgattaatgtgatttttaattcatgtttagttattctt 5603615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 151 - 604
Target Start/End: Complemental strand, 5632208 - 5631755
Alignment:
Q  151 caagttttcttttttggcagaacaaataaagtagtgtatattatattcatgaagatctcatttggtcaagcctaacaaaaaactcatgtctatataagtt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5632208 caagttttcttttttggcagaacaaataaagtagtgtatattatattcatgaagatctcatttagtcaagcctaacaaaaaactcatgtctatataagtt 5632109  T
Q  251 ctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttcgtatgatccttccacaactcttttctgtttgaattttggaggttca 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  5632108 ctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttcttatgatccttccacaactcttttctgtttgaatttcggaggttca 5632009  T
Q  351 ggtttgaataaagtgctatatcatcaatttcaaatttgagagatcttggaaagnnnnnnnccccatcgctaactgtcttatgcatctttccgataaacat 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  5632008 ggtttgaataaagtgctatatcatcaatttcaaatttgagagatcttggaaagtttttttccccatcgctaactgtcttatgcatctttccgataaacat 5631909  T
Q  451 cttgacttctgtcatagaagaacagttcaataatgatcaaacttgaatttatagtaattcgtgtttattcattcttttgcaagtactgattaacacaatt 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5631908 cttgacttctgtcatagaagaacagttcaataatgatcaaacttgaatttatagtaattcgtgtttattcattcttttgcaagtactgattaacacaatt 5631809  T
Q  551 tcaaagttttgcactatgattaatgtgatttttaattcatctttagttattctt 604  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5631808 tcaaagttttgcactatgattaatgtgatttttaattcatgtttagttattctt 5631755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 192 - 497
Target Start/End: Complemental strand, 5649968 - 5649671
Alignment:
Q  192 tatattcatgaagatctcatttggtcaagcctaacaaaaaactcatgtctatataagttctgaagtacgtacatcatctaatacaacgaaagcttttatg 291  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5649968 tatattcatgaagatctcatttggtcaagcctaacaaaaagctcatgcctatataagttctgaagtacgtacatcatctaatacaatgaaagcttttatg 5649869  T
Q  292 cttttgagtcttcgtatgatccttccacaactcttttctgtttgaattttggaggttcaggtttgaataaagtgctatatcatcaatttcaaatttgaga 391  Q
    ||||||||||||| || ||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||  |||||||| ||||||||||||||    
T  5649868 cttttgagtcttcttacgatccttccacaacttttttcagtttgaatttaggaggctcaggtttgaataaagtgc--tatcatcactttcaaatttgaga 5649771  T
Q  392 gatcttggaaagnnnnnnnccccatcgctaactgtcttatgcatctttccgataaacatcttgacttctgtcatagaagaacagttcaataatgatcaaa 491  Q
    | ||||||||||        |||||||||||| |||||| ||||| ||| |||||||||||||||||||| |||   ||| |||||||||||||||||||    
T  5649770 gttcttggaaagtttttt--cccatcgctaacagtcttacgcatc-ttctgataaacatcttgacttctgccat---agaccagttcaataatgatcaaa 5649677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 5603012 - 5603100
Alignment:
Q  1 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggatgaagccataatgaatcaaacaaacaagttg 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5603012 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggatgaagccataatgaatcaaacaaacaagttg 5603100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 5632358 - 5632270
Alignment:
Q  1 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggatgaagccataatgaatcaaacaaacaagttg 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5632358 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggatgaagccataatgaatcaaacaaacaagttg 5632270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5602750 - 5602832
Alignment:
Q  1 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggatgaagccataatgaatcaaacaaac 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  5602750 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggataaagccataaagaatcaaacaaac 5602832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 5638192 - 5638110
Alignment:
Q  1 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggatgaagccataatgaatcaaacaaac 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  5638192 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggataaagccataaagaatcaaacaaac 5638110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 5638456 - 5638374
Alignment:
Q  1 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggatgaagccataatgaatcaaacaaac 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  5638456 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggataaagccataaagaatcaaacaaac 5638374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 5602164 - 5602249
Alignment:
Q  1 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggatgaagccataatgaatcaa-acaaacaa 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  5602164 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggataaagccataaagaatcaanacaaacaa 5602249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 5602500 - 5602570
Alignment:
Q  13 caatatattgcagtttaaatttagaaagatatgagcacaaaagggatgaagccataatgaatcaaacaaac 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  5602500 caatatattgcagtttaaatttagaaagatatgagcacaaaagggataaagccataaagaatcaaacaaac 5602570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 5651390 - 5651308
Alignment:
Q  1 cgggttcttttgcaatatattgcagtttaaatttagaaagatatgagcacaaaagggatgaagccataatgaatcaaacaaac 83  Q
    ||||||||||  ||||  |||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  5651390 cgggttctttctcaatccattgcagtttaagtttagaaagatgtgaacacaaaagggatgaagccataaagaatcaaacaaac 5651308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 13168912 - 13168821
Alignment:
Q  310 atccttccacaactcttttctgtttgaattttggaggttcaggtttgaataaagtgctatatcatcaatttcaaatttgagagatcttggaaag 403  Q
    ||||||||| |||||||||||||||||| || |||||||||||||||||| |||||  | || ||||||||||||||||| | |||||||||||    
T  13168912 atccttccataactcttttctgtttgaacttaggaggttcaggtttgaatgaagtg--acattatcaatttcaaatttgacaaatcttggaaag 13168821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 5550109 - 5550051
Alignment:
Q  246 aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttc 304  Q
    |||||||||| || |||||||||||| ||||| ||||| ||| ||||||||||||||||    
T  5550109 aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttc 5550051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 5607820 - 5607878
Alignment:
Q  246 aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttc 304  Q
    |||||||||| || |||||||||||| ||||| ||||| ||| ||||||||||||||||    
T  5607820 aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttc 5607878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 5627550 - 5627492
Alignment:
Q  246 aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttc 304  Q
    |||||||||| || |||||||||||| ||||| ||||| ||| ||||||||||||||||    
T  5627550 aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttc 5627492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 14405037 - 14404979
Alignment:
Q  246 aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttc 304  Q
    |||||||||| || |||||||||||| ||||| ||||| ||| ||||||||||||||||    
T  14405037 aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttc 14404979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 6310251 - 6310309
Alignment:
Q  246 aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttc 304  Q
    |||||||||| || |||||||||||| ||||| ||||| ||| |||| |||||||||||    
T  6310251 aagttctgaattatgtacatcatctattacaatgaaagatttcatgcgtttgagtcttc 6310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 13816 - 13874
Alignment:
Q  246 aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttc 304  Q
    |||||||||| || |||||||||||| ||||| ||||| ||| ||||||||||||||||    
T  13816 aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttc 13874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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