View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_88 (Length: 224)
Name: NF2700_low_88
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 43062883 - 43062689
Alignment:
| Q |
23 |
ttgaggaattggctaatgagaacatcaatcaaattggtcgaaaataaaacagcactaccagttcaatccaaaatggacagtgcatttttctcagaaagtc |
122 |
Q |
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| T |
43062883 |
ttgaggaattggctaatgagaacatcaatcaaattggtcgaaaataaaacagcactaccagttcaatccaaaatggacagtgcatttttctcagaaagtc |
43062784 |
T |
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| Q |
123 |
cctatgaatctatgatcagtatcataacatgattcaattacgattccttcaaaaaggtaaactaataaatataggagtgaaagaaagtccctatg |
217 |
Q |
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| T |
43062783 |
cctatgaatctatgatcagtatcataacatgattcaattacgattccttcaaaaaggtaaactaataaatataggagtgaaagaaagtccctatg |
43062689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 40179058 - 40179145
Alignment:
| Q |
21 |
ttttgaggaattggctaatgagaacatcaatcaaattggtcgaaaataaaacagcactaccagttcaatccaaaatggacagtgcattt |
109 |
Q |
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| T |
40179058 |
ttttgtggaattggctaatgagaacatcaatcaaattggac-agaataaaataggactaccagttcaatccaaaatggaaagtgcattt |
40179145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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