View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2700_low_90 (Length: 217)
Name: NF2700_low_90
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2700_low_90 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11099315 - 11099101
Alignment:
| Q |
1 |
tgtagcaaccaaaatgagttgatatgtcatcgccttaaaatcagcatatagatgctatcagtaaccctggcttgtcatcttgattcctcctccaaacttt |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11099315 |
tgtagcagccaaaatgagttgatatgtcatcgccttaaaatcagcatattgatgctatcagtagccctggcttgtcatcttgattcctcctccaaacttt |
11099216 |
T |
|
| Q |
101 |
ttcaccctttaacttgtttaccaatagcatcctgtactcatgctttctttattcattagtgtaaacagggtctggacaataaggtctgtgtgatcatagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
11099215 |
ttcaccctttaacttgtttaccaatagcatcctgtactcatgctttctttattcattagtgtaaacagggtctggacaataaagtccgtgtgatcatagg |
11099116 |
T |
|
| Q |
201 |
gcaagtatgttgtaa |
215 |
Q |
| |
|
||||||||||||||| |
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| T |
11099115 |
gcaagtatgttgtaa |
11099101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 37281137 - 37281290
Alignment:
| Q |
1 |
tgtagcaaccaaaatgagttgatatgtcatcgccttaaaatcagcatatagatgctatcagtaaccctggcttgtcatcttgattcctcctccaaacttt |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||||||||| |||| |||||||| ||| |||| ||||||||||||||||||||||||||||||| |
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| T |
37281137 |
tgtagcagtcaaaatgagttgatacgtcaacgccttaaaatcagtatatcgatgctattagtcgccctagcttgtcatcttgattcctcctccaaacttt |
37281236 |
T |
|
| Q |
101 |
ttcaccctttaacttgtttaccaatagcatcctgtactcatgctttctttattc |
154 |
Q |
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||| |||||||||||||||| |||||||||||| ||| |||||||||||||||| |
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| T |
37281237 |
ttcgccctttaacttgtttatcaatagcatcctatacccatgctttctttattc |
37281290 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 17998014 - 17998228
Alignment:
| Q |
1 |
tgtagcaaccaaaatgagttgatatgtcatcgccttaaaatcagcatatagatgctatcagtaaccctggcttgtcatcttgattcctcctccaaacttt |
100 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17998014 |
tgtagcagccaaaatgagttgatatgtcatcgccttaaaatcagcatattgatgctatcagtagccctggcttgtcatcttgattcctcctccaaacttt |
17998113 |
T |
|
| Q |
101 |
ttcaccctttaacttgtttaccaatagcatcctgtactcatgctttctttattcattagtgtaaacagggtctggacaataaggtctgtgtgatcatagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
17998114 |
ttcaccctttaacttgtttaccaatagcatcctgtactcatgctttctttattcattagtgtaaacagggtctggacaataaagtccgtgtgatcatagg |
17998213 |
T |
|
| Q |
201 |
gcaagtatgttgtaa |
215 |
Q |
| |
|
||||||||||||||| |
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| T |
17998214 |
gcaagtatgttgtaa |
17998228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 36599680 - 36599492
Alignment:
| Q |
1 |
tgtagcaaccaaaatgagttgatatgtcatcgccttaaaatcagcatatagatgctatcagtaaccctggcttgtcatcttgattcctcctccaaacttt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36599680 |
tgtagcagccaaaatgagttgatatgtcatcgccttaaaatcagcatatcgatgctatcagtagccctggcttgtcatcttgattcctcctccaaacttt |
36599581 |
T |
|
| Q |
101 |
ttcaccctttaacttgtttaccaatagcatcctgtactcatgctttctttattcattagtgtaaacagggtctggacaataaggtctgt |
189 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36599580 |
ttcaccctttaacttgtttaccaatagcatcctatactcatgctttctttattcattagtgtaaacagggtctggacaataaggtctgt |
36599492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 21936466 - 21936313
Alignment:
| Q |
1 |
tgtagcaaccaaaatgagttgatatgtcatcgccttaaaatcagcatatagatgctatcagtaaccctggcttgtcatcttgattcctcctccaaacttt |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21936466 |
tgtagcagccaaaatgagttgatacgtcaacgccttaaaatcagcatatcgatgctatcagtcgccctggcttgtcatcttgattcctcctccaaacttt |
21936367 |
T |
|
| Q |
101 |
ttcaccctttaacttgtttaccaatagcatcctgtactcatgctttctttattc |
154 |
Q |
| |
|
||| |||||||||||||||| |||||||||||| ||| |||||||||||||||| |
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|
| T |
21936366 |
ttcgccctttaacttgtttatcaatagcatcctatacccatgctttctttattc |
21936313 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 247061 - 246908
Alignment:
| Q |
1 |
tgtagcaaccaaaatgagttgatatgtcatcgccttaaaatcagcatatagatgctatcagtaaccctggcttgtcatcttgattcctcctccaaacttt |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||||||||| |||| |||||||| ||| |||| ||||||||||||||||||||||||||||||| |
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| T |
247061 |
tgtagcagtcaaaatgagttgatacgtcaacgccttaaaatcagtatatcgatgctattagtcgccctagcttgtcatcttgattcctcctccaaacttt |
246962 |
T |
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| Q |
101 |
ttcaccctttaacttgtttaccaatagcatcctgtactcatgctttctttattc |
154 |
Q |
| |
|
||| |||||||||||||||| |||||||||||| ||| |||||||||||||||| |
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| T |
246961 |
ttcgccctttaacttgtttatcaatagcatcctatacccatgctttctttattc |
246908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 7313034 - 7313187
Alignment:
| Q |
1 |
tgtagcaaccaaaatgagttgatatgtcatcgccttaaaatcagcatatagatgctatcagtaaccctggcttgtcatcttgattcctcctccaaacttt |
100 |
Q |
| |
|
||||||| |||||||||||||||| | | |||||||||||||||||| |||||||||||| | |||||||||||||||||||| |||||||||||| |
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| T |
7313034 |
tgtagcagccaaaatgagttgatacattaatgccttaaaatcagcatatcgatgctatcagtcgtcttggcttgtcatcttgattccacctccaaacttt |
7313133 |
T |
|
| Q |
101 |
ttcaccctttaacttgtttaccaatagcatcctgtactcatgctttctttattc |
154 |
Q |
| |
|
||| ||||||||||||| || |||||||||||| ||| |||||||||||||||| |
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|
| T |
7313134 |
ttcgccctttaacttgtctatcaatagcatcctatacccatgctttctttattc |
7313187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 11135581 - 11135704
Alignment:
| Q |
31 |
cgccttaaaatcagcatatagatgctatcagtaaccctggcttgtcatcttgattcctcctccaaactttttcaccctttaacttgtttaccaatagcat |
130 |
Q |
| |
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||||||||||||| ||||| ||| |||||||| |||| ||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||||||| |
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| T |
11135581 |
cgccttaaaatcaacatatcgatactatcagttgtcctgccttgtcatcttgattccacctccaaactttttcgccctttaacttgtctatcaatagcat |
11135680 |
T |
|
| Q |
131 |
cctgtactcatgctttctttattc |
154 |
Q |
| |
|
||| ||| |||||||||||||||| |
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|
| T |
11135681 |
cctatacccatgctttctttattc |
11135704 |
T |
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