View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2700_low_93 (Length: 207)

Name: NF2700_low_93
Description: NF2700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2700_low_93
NF2700_low_93
[»] chr8 (1 HSPs)
chr8 (2-207)||(7885182-7885386)
[»] chr2 (3 HSPs)
chr2 (46-132)||(21505469-21505559)
chr2 (40-93)||(18372404-18372457)
chr2 (102-132)||(8821695-8821725)
[»] chr7 (2 HSPs)
chr7 (21-96)||(21255427-21255502)
chr7 (36-108)||(13760289-13760362)
[»] chr1 (1 HSPs)
chr1 (54-107)||(35414031-35414084)
[»] scaffold0370 (2 HSPs)
scaffold0370 (65-108)||(8914-8957)
scaffold0370 (65-108)||(14204-14247)
[»] chr5 (1 HSPs)
chr5 (65-100)||(5927871-5927906)
[»] chr4 (1 HSPs)
chr4 (65-108)||(27843828-27843871)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 7885182 - 7885386
Alignment:
Q  2 aataggggttacgcattgtagcactgtaggtcatgttgtttgactaatatgcaatagtaacattataaatactttgttcatacattataattaacacata 101  Q
    ||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7885182 aataggggttacgtattgtagccttgtaggtcatgttgtttgactaatatgcaatagtaacattataaatactttgttcatacattataattaacacata 7885281  T
Q  102 caatcaaacaagcttatttttgcaaatttatgtattttttaatgttgctcgaaactctaagcaattgtatctaacactctacttaatatcatgctctaaa 201  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7885282 caat-aaacaagcttatttttgcaaatttatgtattttttaatgttgctcgaaactctaagcaattgtatctaacactctacttaaaatcatgctctaaa 7885380  T
Q  202 agtctc 207  Q
     |||||    
T  7885381 tgtctc 7885386  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 21505559 - 21505469
Alignment:
Q  46 taatatgcaatagtaacattataaatactttgttcatacattataattaaca----catacaatcaaacaagcttatttttgcaaatttat 132  Q
    ||||||||||| || | | ||||||||||||||| ||||||| |||||||||    || |||||||||||| |||||||| ||||||||||    
T  21505559 taatatgcaattgtcaaactataaatactttgtttatacattgtaattaacatatccaaacaatcaaacaaacttattttcgcaaatttat 21505469  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 18372404 - 18372457
Alignment:
Q  40 tttgactaatatgcaatagtaacattataaatactttgttcatacattataatt 93  Q
    |||| |||||| |||||||| ||| |||||||||||| ||||||||||||||||    
T  18372404 tttggctaataggcaatagttacactataaatactttattcatacattataatt 18372457  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 132
Target Start/End: Complemental strand, 8821725 - 8821695
Alignment:
Q  102 caatcaaacaagcttatttttgcaaatttat 132  Q
    |||||||||||||||||||||||||||||||    
T  8821725 caatcaaacaagcttatttttgcaaatttat 8821695  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 21255427 - 21255502
Alignment:
Q  21 agcactgtaggtcatgttgtttgactaatatgcaatagtaacattataaatactttgttcatacattataattaac 96  Q
    |||| |||| ||||||||||||| ||||||  ||||||| |||||||||||| | | |||||||||| ||||||||    
T  21255427 agcattgtatgtcatgttgtttgtctaatagacaatagttacattataaatattatattcatacattgtaattaac 21255502  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 13760289 - 13760362
Alignment:
Q  36 gttgtttgactaatatgcaatagtaacattataaatact-ttgttcatacattataattaacacatacaatcaa 108  Q
    |||||||||||||||   |||| | |||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  13760289 gttgtttgactaataaataataattacattataaatactcttgttcatacattgtaattaacacgtataatcaa 13760362  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 35414031 - 35414084
Alignment:
Q  54 aatagtaacattataaatactttgttcatacattataattaacacatacaatca 107  Q
    |||||| |||||||||| |||||||| |||||||||||||| || |||||||||    
T  35414031 aatagttacattataaacactttgtttatacattataattatcatatacaatca 35414084  T

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Target: scaffold0370 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 8957 - 8914
Alignment:
Q  65 tataaatactttgttcatacattataattaacacatacaatcaa 108  Q
    |||||||| |||||||||||||| |||||||||||| |||||||    
T  8957 tataaatagtttgttcatacattgtaattaacacatccaatcaa 8914  T

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Target: scaffold0370; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 14247 - 14204
Alignment:
Q  65 tataaatactttgttcatacattataattaacacatacaatcaa 108  Q
    |||||||| |||||||||||||| |||||||||||| |||||||    
T  14247 tataaatagtttgttcatacattgtaattaacacatccaatcaa 14204  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 5927871 - 5927906
Alignment:
Q  65 tataaatactttgttcatacattataattaacacat 100  Q
    |||||||||||| |||||||||||||||||||||||    
T  5927871 tataaatactttattcatacattataattaacacat 5927906  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 27843828 - 27843871
Alignment:
Q  65 tataaatactttgttcatacattataattaacacatacaatcaa 108  Q
    |||||||||| |||||||||||| |||||||||||| |||||||    
T  27843828 tataaatactatgttcatacattgtaattaacacattcaatcaa 27843871  T

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