View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2701_high_1 (Length: 1031)
Name: NF2701_high_1
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_high_1 |
 | |
|
| [»] scaffold0181 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 674; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 128 - 1017
Target Start/End: Original strand, 38982812 - 38983709
Alignment:
| Q |
128 |
tctttcccattgcaacaatcataagaagaagatcaattaataggtgaaaaagttgag-ttttaagggagagataagagtgaatctttgtcaagttcatta |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38982812 |
tctttcccattgcaacaatcataagaagaagatcaattaagaggtgaaaaagttgagattttaagagagagataagagtgaatctttgtcaagttcatta |
38982911 |
T |
|
| Q |
227 |
ctagaagaagagatggacaatgaataaggtgagaagtaggggtaatgttttaaattgaacattaatttggagaaaatcatgtagttgttggagtaagggt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
38982912 |
ctagaagaagagatggacaatgaataaggtgagaagtaggggtaatgttttaaattgaacattaatttggagaaaatcatgtagctgttggaggaagggt |
38983011 |
T |
|
| Q |
327 |
aagagggttgtcgtgatgttggtagagacaaagggataatatggtggtgttagactaaattctttggtatcattgttttagactgaacattaatttggag |
426 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38983012 |
aagaggattgtcgtgatgttggtagagacaaagggataatatggtggtgttagactaaattctttggcatcattgttttagactgaacattaatttggaa |
38983111 |
T |
|
| Q |
427 |
aaactcattggcatcacactcttagttagaatgtaaactcacgattgttagttacacaaacaagaaaatatgagattttaacaatggcttgatgtttgtg |
526 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38983112 |
aaactcattggcatcacactcttagttatattgtaaactcacgattgttagttacacaaacaagaaaagatgagattttaacaatggcttgatgtttgtg |
38983211 |
T |
|
| Q |
527 |
gtgggttagtgaaagaaatggatgagagacaacggtgcagaagagaatgataaatagatctagtgttgagagactataataaggatgtgttatatatttg |
626 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
38983212 |
gtgggttagtg-aaggaatggatgagagacaacggtaaggaagataatgataaatagatctagtgttgagacactataataaggatgtattatatatttg |
38983310 |
T |
|
| Q |
627 |
atctaatggcttaaaacaacttttctatagtgggaaagttttctccttttccatgtgaaatgccacctcaagagtttccctccnnnnnnnnnnnnnnnnt |
726 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
38983311 |
atctaatggcttaaaacaacttttctatggtgggaaagttttctcattttccatgtgaaatgtcacctcaagagtttccctctaaaaaaaaacgaaaaat |
38983410 |
T |
|
| Q |
727 |
aggattcacgcttaaagtagagtttcttctaccttaacttctaaatgcgtatattcattacatcttttatcttggaac--------ctcattaggttgtc |
818 |
Q |
| |
|
|| | | ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||| |||| ||||||||| |
|
|
| T |
38983411 |
agaagttacgcttaaagttgagtttcttctaccttagcttctaaatgcgtatatccattaaatattttatcttggaacctgtaaaactcaataggttgtc |
38983510 |
T |
|
| Q |
819 |
ctcttaaggagtaatcaagtatttttgtcatcgtctctcgagactggtctggattattcttagcaatgaccctttagactgatgttaagtgtttaacgtt |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38983511 |
ctcttaaggagtaatcaagtatttttgtcatcgtctctcgagactggtctagattattcttagcaatgaccctttagactgatgttaagtgtttaacgtt |
38983610 |
T |
|
| Q |
919 |
gtgctagacgccgacacttctacatgaagctcaacttgcatgtgtcgtcatttccaaggtgagatattactccatcttcttccagctccaaacatgata |
1017 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38983611 |
gttctagacgcccacacttctacatgaagctcaacttgcatgtgtcgtcatttccaaggtgagatattactccatcttcttccagctccaaacatgata |
38983709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 38979468 - 38979581
Alignment:
| Q |
19 |
agtttgagcaccaaaagtgaaatcagccataaaataaactaaagatgcacaaccttttatcaatctgattgaattgaaaaaacaatgattattttgatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38979468 |
agtttgagcaccaaaagtgaaatcagccataaaatagactaaagctgcacaaccctttatcaatctgattgaattgaaaaaaccatgattattttgatca |
38979567 |
T |
|
| Q |
119 |
taagttgtgtcttt |
132 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38979568 |
taagttgtgtcttt |
38979581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 627 - 688
Target Start/End: Complemental strand, 38979241 - 38979178
Alignment:
| Q |
627 |
atctaatggcttaaaacaacttttc--tatagtgggaaagttttctccttttccatgtgaaatg |
688 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
38979241 |
atctaatggcttaaaacaacttttctatatattgggaaagttttccacttttccatgtgaaatg |
38979178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 41261577 - 41261667
Alignment:
| Q |
229 |
agaagaagaga--tggacaatgaataaggtgagaagtaggggtaatgttttaaatt-gaacattaatttggagaaaatcatgtagttgttg |
316 |
Q |
| |
|
||||||||||| ||| |||| |||||||| ||||||| |||| ||| |||||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
41261577 |
agaagaagagacatgggcaattaataaggttagaagtaagggttatgatttaaaagagaacattaatctggagaaaatcatgtggttgttg |
41261667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 234 - 610
Target Start/End: Complemental strand, 12139821 - 12139446
Alignment:
| Q |
234 |
aagagatggacaatgaataaggtgagaagtaggggtaatgttttaaattgaacattaatttggagaaaatcatgtagttgttggagtaagggtaagaggg |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |
|
|
| T |
12139821 |
aagagatggacaatgaataaggtgagaagtaggggtaatgttttaaattgaacattaatttggagaaaatcatgtagctgttggaggaagggtaagagag |
12139722 |
T |
|
| Q |
334 |
ttgtcgtgatgttggtagagacaaagggataatatggtggtgttagactaaattctttggtatcattgttttagactgaacattaatttggagaaactca |
433 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12139721 |
ttgtcgtaatgttggtagagacaaagggataatatggtggtgttagactaaattctttggcatcattgttttagactgaacattaatttggagaaactca |
12139622 |
T |
|
| Q |
434 |
ttggcatcacactcttagttagaatgtaaactcacgattgttagttacacaaacaagaaaatatgagattttaacaatggcttgatgtttgtggtgggtt |
533 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12139621 |
ttggcatcacactcttagttagattgtaaactcaccattgttagttacacaaacaagaaaatatgagattttaacaatggcttgatgtttgtggtgggtt |
12139522 |
T |
|
| Q |
534 |
agtgaaagaaatggatgagagacaacggtgcagaagagaatgataaatagatctagtgttgagagactataataagg |
610 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12139521 |
agtg-aaggaatggatgagagacaacggtgaggaagagaatgataaatagatctagtgttaagagactataataagg |
12139446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 602 - 650
Target Start/End: Complemental strand, 12139244 - 12139196
Alignment:
| Q |
602 |
ataataaggatgtgttatatatttgatctaatggcttaaaacaactttt |
650 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12139244 |
ataataaggatgtgttatatatttgatctaatgacttaaaacaactttt |
12139196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 657 - 693
Target Start/End: Complemental strand, 12138195 - 12138159
Alignment:
| Q |
657 |
tgggaaagttttctccttttccatgtgaaatgccacc |
693 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12138195 |
tgggaaagttttctcctttcccatgtgaaatgccacc |
12138159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 651 - 697
Target Start/End: Complemental strand, 9123656 - 9123610
Alignment:
| Q |
651 |
ctatagtgggaaagttttctccttttccatgtgaaatgccacctcaa |
697 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
9123656 |
ctatggtgggaagattttcaccttttccatgtgaaatgccacctcaa |
9123610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 204 - 539
Target Start/End: Original strand, 46097582 - 46097918
Alignment:
| Q |
204 |
gtgaatctttgtcaagttcattactagaagaagagatggacaatgaataaggtgagaagtaggggtaatgttttaaattgaacattaatttggagaaaat |
303 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46097582 |
gtgaatctttgtcaagttcattacaagaagaagagatggacaatgaatacggtgagaagtaggagtaatgttttaaactgaacattaatttggagaaaat |
46097681 |
T |
|
| Q |
304 |
catgtagttgttggagtaagggtaagagggttgtcgtgatgttggtagagacaaagggataatatggtggtgttagactaaattctttggtatcattgtt |
403 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
46097682 |
catgtagctgttggaggaagggtaagagggttgtcgtgatgttggtggagacaaagggatagtatggtggtgttagactaaatttattgacatcattgtt |
46097781 |
T |
|
| Q |
404 |
ttagactgaacattaatttggagaaactcattggcatcacactcttagttagaatgtaaact--cacgattgttagttacacaaacaagaaaatatgaga |
501 |
Q |
| |
|
||| ||||||||||||||||||| || |||||||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
46097782 |
ttaaactgaacattaatttggag-aattcattggcgccacactgttagttagattgtaaactcacacgattgttagttacacaaacaaggaaagatgaga |
46097880 |
T |
|
| Q |
502 |
ttttaacaatggcttgatgtttgtggtgggttagtgaa |
539 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46097881 |
ttttaacaatggcttgatgttggtggtgggttagtgaa |
46097918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 622 - 687
Target Start/End: Complemental strand, 46097463 - 46097399
Alignment:
| Q |
622 |
atttgatctaatggcttaaaacaacttttctatagtgggaaagttttctccttttccatgtgaaat |
687 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
46097463 |
atttaatctaatggcttaaa-caactttcctatggtgggaaagttttcccctttcccatgtgaaat |
46097399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 316
Target Start/End: Complemental strand, 12201739 - 12201649
Alignment:
| Q |
229 |
agaagaagaga--tggacaatgaataaggtgagaagtaggggtaatgttttaaatt-gaacattaatttggagaaaatcatgtagttgttg |
316 |
Q |
| |
|
||||||||||| ||| |||| |||||||| ||||||| |||| ||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12201739 |
agaagaagagacatgggcaattaataaggttagaagtaagggttatgatttaaaagagaacattaatttggagaaaatcatgtagttgttg |
12201649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 935 - 980
Target Start/End: Original strand, 26222524 - 26222569
Alignment:
| Q |
935 |
cttctacatgaagctcaacttgcatgtgtcgtcatttccaaggtga |
980 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
26222524 |
cttctacatgaaggtcaacttgcatgtgttgtcatttacaaggtga |
26222569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 645 - 694
Target Start/End: Original strand, 6381567 - 6381616
Alignment:
| Q |
645 |
acttttctatagtgggaaagttttctccttttccatgtgaaatgccacct |
694 |
Q |
| |
|
||||| |||| |||| |||||||| |||||| |||||||||||||||||| |
|
|
| T |
6381567 |
actttcctatggtggaaaagttttatcctttcccatgtgaaatgccacct |
6381616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 935 - 980
Target Start/End: Original strand, 32584311 - 32584356
Alignment:
| Q |
935 |
cttctacatgaagctcaacttgcatgtgtcgtcatttccaaggtga |
980 |
Q |
| |
|
||||||||||||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
32584311 |
cttctacatgaaggtcaacttgcaagtgttatcatttccaaggtga |
32584356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 8615503 - 8615570
Alignment:
| Q |
196 |
agataagagtgaatctttgtcaagttcattactagaagaagag--atggacaatgaataaggtgagaa |
261 |
Q |
| |
|
||||||||| |||||||||||||||| |||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
8615503 |
agataagagagaatctttgtcaagttggttacaagaagaagagacatggacaatgaataaggttagaa |
8615570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 624 - 693
Target Start/End: Complemental strand, 36009 - 35940
Alignment:
| Q |
624 |
ttgatctaatggcttaaaacaacttttctatagtgggaaagttttctccttttccatgtgaaatgccacc |
693 |
Q |
| |
|
|||||||||||||| ||| ||| ||| | ||||||| |||||||| |||||| |||||||||||| |||| |
|
|
| T |
36009 |
ttgatctaatggctaaaatcaaatttcccatagtggaaaagttttgtcctttcccatgtgaaatgtcacc |
35940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 935 - 975
Target Start/End: Original strand, 31025024 - 31025064
Alignment:
| Q |
935 |
cttctacatgaagctcaacttgcatgtgtcgtcatttccaa |
975 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
31025024 |
cttctacatgaaggtcaacttgcctgtgtcgtcatttccaa |
31025064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 627 - 693
Target Start/End: Original strand, 2601213 - 2601279
Alignment:
| Q |
627 |
atctaatggcttaaaacaacttttctatagtgggaaagttttctccttttccatgtgaaatgccacc |
693 |
Q |
| |
|
||||||||| | |||||| |||||||| |||||||||||||| | ||| |||||||||||| |||| |
|
|
| T |
2601213 |
atctaatggttaaaaacattttttctatggtgggaaagttttcacttttcccatgtgaaatgtcacc |
2601279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 10670526 - 10670448
Alignment:
| Q |
239 |
atggacaatgaataaggtgagaagtaggggtaatgttttaaatt-gaacattaatttggagaaaatcatgtagttgttg |
316 |
Q |
| |
|
|||| |||| |||||| | ||||||| |||| ||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10670526 |
atgggcaattaataagattagaagtaagggttatgatttaaaagagaacattaatttggagaaaatcatgtagttgttg |
10670448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 647 - 693
Target Start/End: Original strand, 21853504 - 21853550
Alignment:
| Q |
647 |
ttttctatagtgggaaagttttctccttttccatgtgaaatgccacc |
693 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
21853504 |
ttttctatggtgggaaagttttacccttttccatgttaaatgccacc |
21853550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 621 - 694
Target Start/End: Complemental strand, 15150 - 15077
Alignment:
| Q |
621 |
tatttgatctaatggcttaaaacaacttttctatagtgggaaagttttctccttttccatgtgaaatgccacct |
694 |
Q |
| |
|
||||| ||| ||||||| ||| ||||| | |||| ||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
15150 |
tatttaatcaaatggctaaaatcaactgtcctatggtgggaaagttttaccctttcccatgttaaatgccacct |
15077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University