View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_high_11 (Length: 474)
Name: NF2701_high_11
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 399
Target Start/End: Original strand, 984802 - 985195
Alignment:
| Q |
6 |
gagcttgatagagaaaaaactcattagagttcatgttgattatttggtataaaatgtgagttgtgtaaataattttcatgtttatagaactcaattttta |
105 |
Q |
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| T |
984802 |
gagcttgatagagaaaaaactcattagagttcatgttgattatttggtataagatgtgagttgtgtacataattttcatgtttatagaactcaattttta |
984901 |
T |
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| Q |
106 |
catacaaattgagaaactaacttctaactactttcctnnnnnnnttaatttctaaccactaacttactcaatatttctggtaacaacaacaatttataac |
205 |
Q |
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| T |
984902 |
catacaaattgagaaactaacttctaactactttcctaaaaaaattaatttctaaccactaacttactcaatatttctggtaacaacaacaatttataac |
985001 |
T |
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| Q |
206 |
cttagcaaccatagttatttgcatttgtaactactaaagagagtgaaacaactatggaaattagagacaacaaaaaccaatttggtcgccatatttggca |
305 |
Q |
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| T |
985002 |
cttagcaaccatagttatttgcatttgtaactactaaagagagtgaaacaactatggaaattagagacaacaaaaaccaatttggtcgccatatttggca |
985101 |
T |
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| Q |
306 |
tctctatttctttgcgctaattaannnnnnnctagtagcatgcgaactaggatgtagggtgtgtttgatctgttaaacagtaagtattagatag |
399 |
Q |
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| T |
985102 |
tctctatttctttgcgctaattaatttttttctagtagcatgcgaactaggatgtagggtgtgtttgatttattaaacagtaagtattagatag |
985195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 32468099 - 32468067
Alignment:
| Q |
361 |
agggtgtgtttgatctgttaaacagtaagtatt |
393 |
Q |
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| T |
32468099 |
agggtgtgtttgatctgttaaacagtaagtatt |
32468067 |
T |
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