View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_high_13 (Length: 460)
Name: NF2701_high_13
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 442
Target Start/End: Complemental strand, 11439772 - 11439343
Alignment:
| Q |
13 |
aatattgtctagagtatctcatgcataaaataatggttcaataaaataaacatatcaatgtcatttattttacatgcacaaagtaagtatagtccattca |
112 |
Q |
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| T |
11439772 |
aatattgtctagagtatctcatgcataaaataatggttcaataaaataaacatatcaatgtcatttattttacatgcacaaagtaagtatagtccattca |
11439673 |
T |
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| Q |
113 |
atgnnnnnnnnnnnnntaagtatagtccaaagtctatgagatattttatcattgatgttcaaccttatatgttatagctgttgggatgtgataatcaaag |
212 |
Q |
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| T |
11439672 |
atgaaaaataaaaaaataagtatagtccaaagtctatgagatattttatcattgatgttcaaccttatatgttatagctgttgggatgtgataatcaaag |
11439573 |
T |
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| Q |
213 |
tgatgaaatcacctttccaaatttgcatatccatccaaccataaataaacaatacacaactagacaacaaccaaacagaagaagcaaactaaagagaata |
312 |
Q |
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| T |
11439572 |
tgatgaaatcacctttccaaatttgcatatccatccaaccataactaaacaatacacaactagacaacaaccaaacagaagaagcaaactaaagagaata |
11439473 |
T |
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| Q |
313 |
tgtaggcatttgtttcataaatttggtttgtgactaaacaaatttggagatattatagagattccctttgcttacttttgattaaccgaatgaaggctta |
412 |
Q |
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| T |
11439472 |
tgtaggcatttgtttcataaatttggtttgtgactaaacaaatttggagatattatagagattccctttgcttacttttgattaactgaataaaggctta |
11439373 |
T |
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| Q |
413 |
aaaacaacattctaaagcaaaagactattg |
442 |
Q |
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| T |
11439372 |
aaaacaaaattctaaagcaaaagactattg |
11439343 |
T |
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