View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_high_16 (Length: 423)
Name: NF2701_high_16
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 149 - 299
Target Start/End: Complemental strand, 13826932 - 13826780
Alignment:
| Q |
149 |
ggggagagagagaagggggtggcggaaacgaagaaagttcagtacgaatgtaaaaatgcgttttttattggtgaaaggtgaagaaaacag--aagtcaca |
246 |
Q |
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| T |
13826932 |
ggggagagagagaagggggtggcggaaacgaagaaagttcagtacgaatgtaaaaatgcgttttttattggtgaaaggtgaagaaaacagacaagtcaca |
13826833 |
T |
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| Q |
247 |
aggatggtgtgtgttggttgcaccccctagcttcgctaatataaaaccccact |
299 |
Q |
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| T |
13826832 |
aggatggtgtgtgttggttgcaccccctagcttcgctaatataaaaccccact |
13826780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 13827037 - 13826961
Alignment:
| Q |
71 |
ttgtggaagatcgtgtttgtaggtatgaaagagttgaaatgaattgagaagcggttaccggaaagttgagagatcga |
147 |
Q |
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| T |
13827037 |
ttgtggaagatcgtgtttgtaggtatgaaagagttgaaatgaaatgagaagcagttaccggaaagttgagagatcga |
13826961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 13826406 - 13826335
Alignment:
| Q |
350 |
tgtgtagttagtcatattatccaaatttaaattgtcatgtcgttgattctctcttaaattcatttgttaaat |
421 |
Q |
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| T |
13826406 |
tgtgtagttagtcatattatccaaatttaaattgttatgtcgttgattctctcttaaattcatttcttaaat |
13826335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 338
Target Start/End: Complemental strand, 13826740 - 13826712
Alignment:
| Q |
310 |
agttaatatgattgagataatagttattt |
338 |
Q |
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| T |
13826740 |
agttaatatgattgagataatagttattt |
13826712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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