View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2701_high_2 (Length: 970)

Name: NF2701_high_2
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2701_high_2
NF2701_high_2
[»] chr4 (12 HSPs)
chr4 (498-964)||(26692860-26693327)
chr4 (37-293)||(26696197-26696453)
chr4 (289-414)||(26695699-26695824)
chr4 (422-468)||(4485847-4485893)
chr4 (422-469)||(21623432-21623479)
chr4 (426-465)||(55924804-55924843)
chr4 (426-465)||(56088090-56088129)
chr4 (426-469)||(56497621-56497664)
chr4 (426-460)||(37208045-37208079)
chr4 (418-468)||(46676512-46676562)
chr4 (436-469)||(11269709-11269742)
chr4 (427-468)||(26008063-26008104)
[»] chr2 (11 HSPs)
chr2 (434-482)||(40797377-40797425)
chr2 (422-476)||(29872178-29872232)
chr2 (418-479)||(34903514-34903575)
chr2 (417-482)||(42200683-42200748)
chr2 (440-479)||(5980246-5980285)
chr2 (426-485)||(43826439-43826498)
chr2 (414-460)||(8008033-8008079)
chr2 (418-468)||(40099397-40099447)
chr2 (432-469)||(8387898-8387935)
chr2 (426-467)||(10156022-10156063)
chr2 (426-467)||(19156179-19156220)
[»] chr1 (8 HSPs)
chr1 (422-468)||(8269382-8269428)
chr1 (427-479)||(7652107-7652159)
chr1 (422-469)||(10132457-10132504)
chr1 (426-468)||(19620581-19620623)
chr1 (426-460)||(26525558-26525592)
chr1 (422-467)||(45190284-45190329)
chr1 (427-468)||(49183179-49183220)
chr1 (427-468)||(52592441-52592482)
[»] chr8 (6 HSPs)
chr8 (422-479)||(9014680-9014737)
chr8 (418-467)||(26695320-26695369)
chr8 (422-469)||(1244718-1244765)
chr8 (426-468)||(444418-444460)
chr8 (422-479)||(36122523-36122581)
chr8 (426-468)||(43962038-43962080)
[»] chr5 (3 HSPs)
chr5 (430-482)||(16531275-16531327)
chr5 (422-480)||(11844440-11844498)
chr5 (417-467)||(17338718-17338768)
[»] chr7 (4 HSPs)
chr7 (422-469)||(7872761-7872808)
chr7 (426-469)||(21286355-21286398)
chr7 (417-467)||(2962741-2962791)
chr7 (426-468)||(5352334-5352376)
[»] chr3 (7 HSPs)
chr3 (426-485)||(8121747-8121806)
chr3 (426-469)||(28130947-28130990)
chr3 (426-469)||(35863826-35863869)
chr3 (418-469)||(45096023-45096074)
chr3 (426-479)||(1149072-1149125)
chr3 (422-467)||(1744005-1744050)
chr3 (427-468)||(28266722-28266763)
[»] chr6 (3 HSPs)
chr6 (422-460)||(23507413-23507451)
chr6 (422-476)||(23629843-23629897)
chr6 (426-468)||(26400869-26400911)


Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 498 - 964
Target Start/End: Complemental strand, 26693327 - 26692860
Alignment:
Q  498 tatttgacctatttaaaataataatatatgttacatagttgaatcatcccggccttcttctaaaggatttggcttaattgaaaatttgtatgcatagaca 597  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26693327 tatttgacctatttaaaataataatatatgttgcatagttgaatcatcccggccttcttctaaaggatttggcttaattgaaaatttgtattcatagaca 26693228  T
Q  598 tatttggctccacatgtctaatcacataattgttgataagctaaccaaacttcaactttgagctttaatttcagtttcgtgtccataattaattggtggc 697  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26693227 tatttggctccacatgtctaatcacatgattgttgataagctaaccaaacttcaactttgagctttaatttcagtttcgtgtccataattaattggtggc 26693128  T
Q  698 atttaattacttt-cttcaattaactgtctaatcacttgcttaattgctccggaactttgtcccttacactttgcacgtgaagctaccattaccccatga 796  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26693127 atttaattacttttcttcaattaattgtctaatcacttgcttaattgctccggaactttgtcccttacactttgcacgtgaagctaccattaccccatga 26693028  T
Q  797 gagcgcccatctctgttttggtgctatctcttttccaagaaccatgggttagcaacaactttaatttaccccatgttcttagttcttacctttgcgttca 896  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26693027 gagcgcccatctctgttttggtgctatctcttttccaagaaccatgggttagcaacaactttaatttaccccatgttcttagttcttacctttgcgttca 26692928  T
Q  897 gtttttgtcctcacttttctgttggttgatcatttttgttgtccctttacccctttacctttgcttct 964  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  26692927 gtttttgtcctcacttttctgttggttgatcatttttgttgtccctttatccctttacctttgtttct 26692860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 37 - 293
Target Start/End: Complemental strand, 26696453 - 26696197
Alignment:
Q  37 gaattgtgtgaaccatcacaggtgccaaattgcggtggtaacaattgttgtaaacagtcnnnnnnncttgtgctgttggattgttttctagtttatttat 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  26696453 gaattgtgtgaaccatcacaggtgccaaattgcggtggtaacaattgttgtaaacagtctttttttcttgtgctgttggattgttttctagtttatttat 26696354  T
Q  137 tttttaaatatagtcactgctttaggcatatattagaaaccaaagtatattcccaactttaaaaaagaacaaccgatctatggtgattagtgacagtaga 236  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26696353 tttttaaatatagtcactgctttaggcatatattagaaactaaagtatattcccaactttaaaaaagaacaaccgatctatggtgattagtgacagtaga 26696254  T
Q  237 aaggcatgcatgagtaaatggaatgtgtaaaattgggaagaaaaacacactttaagg 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26696253 aaggcatgcatgagtaaatggaatgtgtaaaattgggaagaaaaacacactttaagg 26696197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 289 - 414
Target Start/End: Complemental strand, 26695824 - 26695699
Alignment:
Q  289 taaggtgtgttgatcataatctccttagcgtaagttaaatatatgtgatagtgactataaaatttgacttgaaataataatatgcgtgattacaaaagta 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26695824 taaggtgtgttgatcataatctccttagcgtaagttaaatatatgtgatagtgactataaaatttgacttgaaataataatatgcgtgattacaaaagta 26695725  T
Q  389 ccattaggtttaaatatttgacctat 414  Q
    ||||||||||||||||||||||||||    
T  26695724 ccattaggtttaaatatttgacctat 26695699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 422 - 468
Target Start/End: Complemental strand, 4485893 - 4485847
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    ||||||||||||||||| ||||||||||||||| ||||| |||||||    
T  4485893 tgaacttagttcaattgataaggacaatacatagtatatgcaaggtc 4485847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 21623479 - 21623432
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatatccaaggtct 469  Q
    ||||||||||||| |||||| ||||||| |||||||||| ||||||||    
T  21623479 tgaacttagttcagttggtagggacaatgcataatatatgcaaggtct 21623432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 465
Target Start/End: Complemental strand, 55924843 - 55924804
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaag 465  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  55924843 cttagctcaattggtaaggacaatacataatatatgcaag 55924804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 465
Target Start/End: Complemental strand, 56088129 - 56088090
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaag 465  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  56088129 cttagctcaattggtaaggacaatacataatatatgcaag 56088090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 469
Target Start/End: Complemental strand, 56497664 - 56497621
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggtct 469  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||    
T  56497664 cttagctcaattggtaaggacaatgcataatatatgcaaggtct 56497621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 426 - 460
Target Start/End: Original strand, 37208045 - 37208079
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatat 460  Q
    ||||||||||||||||| |||||||||||||||||    
T  37208045 cttagttcaattggtaaagacaatacataatatat 37208079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 418 - 468
Target Start/End: Complemental strand, 46676562 - 46676512
Alignment:
Q  418 cccatgaacttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    ||||||| ||||| ||| |||||||||||||| |||||||||| |||||||    
T  46676562 cccatgagcttagctcagttggtaaggacaatgcataatatatgcaaggtc 46676512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 11269709 - 11269742
Alignment:
Q  436 ttggtaaggacaatacataatatatccaaggtct 469  Q
    ||||||||||||||||||||||||| ||||||||    
T  11269709 ttggtaaggacaatacataatatatgcaaggtct 11269742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 468
Target Start/End: Complemental strand, 26008104 - 26008063
Alignment:
Q  427 ttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    |||||||||||||||| |||||| |||||||||| |||||||    
T  26008104 ttagttcaattggtaaagacaatgcataatatatgcaaggtc 26008063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 40797377 - 40797425
Alignment:
Q  434 aattggtaaggacaatacataatatatccaaggtctaaagttcgaattc 482  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  40797377 aattggtaaggacaatgcataatatatacaaggtctaaggttcgaattc 40797425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 29872232 - 29872178
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatatccaaggtctaaagttc 476  Q
    ||||||||||||| |||||| | |||||||||||||||| |||||||||| ||||    
T  29872232 tgaacttagttcagttggtatgaacaatacataatatatgcaaggtctaaggttc 29872178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 34903514 - 34903575
Alignment:
Q  418 cccatgaacttagttcaattggtaaggacaatacataatatatccaaggtctaaagttcgaa 479  Q
    ||||||| ||||||||| |||||||||||| | |||||||||| |||||||| | |||||||    
T  34903514 cccatgagcttagttcagttggtaaggacagtgcataatatatgcaaggtctgaggttcgaa 34903575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 482
Target Start/End: Original strand, 42200683 - 42200748
Alignment:
Q  417 tcccatgaacttagttcaattggtaaggacaatacataatatatccaaggtctaaagttcgaattc 482  Q
    ||||||||| |||  ||| ||||||| ||||||||||||||||| |||||||| | ||||||||||    
T  42200683 tcccatgaagttaactcagttggtaaagacaatacataatatatgcaaggtctgatgttcgaattc 42200748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 479
Target Start/End: Original strand, 5980246 - 5980285
Alignment:
Q  440 taaggacaatacataatatatccaaggtctaaagttcgaa 479  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  5980246 taaggacaatgcataatatatgcaaggtctaaagttcgaa 5980285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 485
Target Start/End: Complemental strand, 43826498 - 43826439
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggtctaaagttcgaattctga 485  Q
    ||||| ||| |||||||||||||||||||||||||  ||||| | | |||||||||||||    
T  43826498 cttagctcagttggtaaggacaatacataatatatgtaaggtatgatgttcgaattctga 43826439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 414 - 460
Target Start/End: Original strand, 8008033 - 8008079
Alignment:
Q  414 tattcccatgaacttagttcaattggtaaggacaatacataatatat 460  Q
    ||||||| ||||||||| ||| ||| |||||||||||||||||||||    
T  8008033 tattcccgtgaacttagctcagttgataaggacaatacataatatat 8008079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 418 - 468
Target Start/End: Complemental strand, 40099447 - 40099397
Alignment:
Q  418 cccatgaacttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    ||||||| ||||| ||| |||||||||||||| |||||||||| |||||||    
T  40099447 cccatgagcttagctcagttggtaaggacaatgcataatatatgcaaggtc 40099397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 469
Target Start/End: Complemental strand, 8387935 - 8387898
Alignment:
Q  432 tcaattggtaaggacaatacataatatatccaaggtct 469  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  8387935 tcaattggtaaggacaatgcataatatattcaaggtct 8387898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 467
Target Start/End: Original strand, 10156022 - 10156063
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggt 467  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||    
T  10156022 cttagctcagttggtaaggacaatacataatatatgcaaggt 10156063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 19156220 - 19156179
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggt 467  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  19156220 cttagctcaattggtaaggacagtacataatatatgcaaggt 19156179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 422 - 468
Target Start/End: Complemental strand, 8269428 - 8269382
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    ||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  8269428 tgaacttagctcagttggtaaggacaatacataatatatgcaaggtc 8269382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 427 - 479
Target Start/End: Original strand, 7652107 - 7652159
Alignment:
Q  427 ttagttcaattggtaaggacaatacataatatatccaaggtctaaagttcgaa 479  Q
    |||||||| |||||| ||||||||||||||||||  ||||||| |||||||||    
T  7652107 ttagttcagttggtatggacaatacataatatatgtaaggtctgaagttcgaa 7652159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 10132504 - 10132457
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatatccaaggtct 469  Q
    ||||||||| ||| |||||||||||||| |||||||||| ||||||||    
T  10132504 tgaacttagatcagttggtaaggacaatgcataatatatgcaaggtct 10132457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 19620581 - 19620623
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||    
T  19620581 cttagctcagttggtaaggacaatacataatatatgcaaggtc 19620623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 426 - 460
Target Start/End: Complemental strand, 26525592 - 26525558
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatat 460  Q
    |||| ||||||||||||||||||||||||||||||    
T  26525592 cttaattcaattggtaaggacaatacataatatat 26525558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 467
Target Start/End: Complemental strand, 45190329 - 45190284
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatatccaaggt 467  Q
    ||||||||||||| |||||| ||||||| |||||||||| ||||||    
T  45190329 tgaacttagttcagttggtatggacaatgcataatatatgcaaggt 45190284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 468
Target Start/End: Original strand, 49183179 - 49183220
Alignment:
Q  427 ttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    |||| ||| ||||||||||||||||||||||||| |||||||    
T  49183179 ttagctcagttggtaaggacaatacataatatatgcaaggtc 49183220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 468
Target Start/End: Complemental strand, 52592482 - 52592441
Alignment:
Q  427 ttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    |||| ||||||||||||||||||| ||||||||| |||||||    
T  52592482 ttagctcaattggtaaggacaatatataatatatgcaaggtc 52592441  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 9014737 - 9014680
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatatccaaggtctaaagttcgaa 479  Q
    ||||||||| ||||||||||  ||||||||||||||||| ||||||||  ||||||||    
T  9014737 tgaacttagctcaattggtagcgacaatacataatatatgcaaggtctggagttcgaa 9014680  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 26695369 - 26695320
Alignment:
Q  418 cccatgaacttagttcaattggtaaggacaatacataatatatccaaggt 467  Q
    ||||||||||||| ||||||| |||||| |||||||||||||| ||||||    
T  26695369 cccatgaacttagctcaattgttaaggataatacataatatatgcaaggt 26695320  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 1244765 - 1244718
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatatccaaggtct 469  Q
    ||||||||| ||| |||||||||||||| |||||||||| ||||||||    
T  1244765 tgaacttagctcagttggtaaggacaatgcataatatatacaaggtct 1244718  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 444418 - 444460
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    ||||| |||||||||||||||||| |||||||||| |||||||    
T  444418 cttagctcaattggtaaggacaatgcataatatatgcaaggtc 444460  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 422 - 479
Target Start/End: Original strand, 36122523 - 36122581
Alignment:
Q  422 tgaacttagttcaattggtaaggac-aatacataatatatccaaggtctaaagttcgaa 479  Q
    |||||||||||||||||||| |||| ||| |||||||||| |||||||||  |||||||    
T  36122523 tgaacttagttcaattggtagggacaaatgcataatatatgcaaggtctagggttcgaa 36122581  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 426 - 468
Target Start/End: Complemental strand, 43962080 - 43962038
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||    
T  43962080 cttagctcagttggtaaggacaatacataatatatgcaaggtc 43962038  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 430 - 482
Target Start/End: Complemental strand, 16531327 - 16531275
Alignment:
Q  430 gttcaattggtaaggacaatacataatatatccaaggtctaaagttcgaattc 482  Q
    ||||| |||||||||||||| |||||||||| ||||||| | |||||||||||    
T  16531327 gttcagttggtaaggacaatgcataatatatgcaaggtccatagttcgaattc 16531275  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 11844498 - 11844440
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatatccaaggtctaaagttcgaat 480  Q
    ||||||||| ||| |||||||||||||| |||||||||| |||||| ||  ||||||||    
T  11844498 tgaacttagctcagttggtaaggacaatgcataatatatgcaaggtttagggttcgaat 11844440  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 17338768 - 17338718
Alignment:
Q  417 tcccatgaacttagttcaattggtaaggacaatacataatatatccaaggt 467  Q
    |||| ||| ||||| ||||||||||| ||||||||||||||||| ||||||    
T  17338768 tcccgtgagcttagctcaattggtaaagacaatacataatatatgcaaggt 17338718  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 7872808 - 7872761
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatatccaaggtct 469  Q
    ||||||||| ||| |||||||||||||| |||||||||| ||||||||    
T  7872808 tgaacttagctcagttggtaaggacaatgcataatatatgcaaggtct 7872761  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 469
Target Start/End: Original strand, 21286355 - 21286398
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggtct 469  Q
    ||||| |||||||||| |||||||||||||||||| ||||||||    
T  21286355 cttagctcaattggtatggacaatacataatatatgcaaggtct 21286398  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 2962791 - 2962741
Alignment:
Q  417 tcccatgaacttagttcaattggtaaggacaatacataatatatccaaggt 467  Q
    |||| ||||||||||||||||||||| || ||| |||||||||| ||||||    
T  2962791 tcccgtgaacttagttcaattggtaaagataatgcataatatatgcaaggt 2962741  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 5352334 - 5352376
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||    
T  5352334 cttagctcagttggtaaggacaatacataatatatacaaggtc 5352376  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 485
Target Start/End: Original strand, 8121747 - 8121806
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggtctaaagttcgaattctga 485  Q
    ||||||||| |||||||||||||||  ||||||||  ||||||| |||||||||| ||||    
T  8121747 cttagttcagttggtaaggacaatatttaatatatgtaaggtctgaagttcgaatcctga 8121806  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 469
Target Start/End: Complemental strand, 28130990 - 28130947
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggtct 469  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||    
T  28130990 cttagttcaaatggtaaggacaatgcataatatatgcaaggtct 28130947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 469
Target Start/End: Complemental strand, 35863869 - 35863826
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggtct 469  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||    
T  35863869 cttagctcagttggtaaggacaatacataatatatgcaaggtct 35863826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 469
Target Start/End: Original strand, 45096023 - 45096074
Alignment:
Q  418 cccatgaacttagttcaattggtaaggacaatacataatatatccaaggtct 469  Q
    ||||||||||||| ||| ||| |||||||||| |||||||||| ||||||||    
T  45096023 cccatgaacttagctcagttgataaggacaatgcataatatatgcaaggtct 45096074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 479
Target Start/End: Complemental strand, 1149125 - 1149072
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggtctaaagttcgaa 479  Q
    ||||| ||| |||||||||||||| |||||||||| |||||||||  |||||||    
T  1149125 cttagctcagttggtaaggacaatgcataatatatgcaaggtctagggttcgaa 1149072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 467
Target Start/End: Complemental strand, 1744050 - 1744005
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatatccaaggt 467  Q
    |||||||| |||| |||||| |||||||||||||||||| ||||||    
T  1744050 tgaacttaattcagttggtatggacaatacataatatatgcaaggt 1744005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 468
Target Start/End: Original strand, 28266722 - 28266763
Alignment:
Q  427 ttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    |||||||| |||||||||||||| |||||||||| |||||||    
T  28266722 ttagttcagttggtaaggacaatgcataatatatgcaaggtc 28266763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 422 - 460
Target Start/End: Complemental strand, 23507451 - 23507413
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatat 460  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  23507451 tgaacttagttcagttggtaaggacaatacataaaatat 23507413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 23629897 - 23629843
Alignment:
Q  422 tgaacttagttcaattggtaaggacaatacataatatatccaaggtctaaagttc 476  Q
    ||||||||| ||||||||||| |||||| |||||||||| |||||| | ||||||    
T  23629897 tgaacttagctcaattggtaatgacaatgcataatatatgcaaggtatgaagttc 23629843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 26400869 - 26400911
Alignment:
Q  426 cttagttcaattggtaaggacaatacataatatatccaaggtc 468  Q
    ||||| |||||||||| |||||||||||||||||| |||||||    
T  26400869 cttagctcaattggtatggacaatacataatatatgcaaggtc 26400911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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