View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_high_20 (Length: 366)
Name: NF2701_high_20
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 8689704 - 8690064
Alignment:
| Q |
1 |
atactcctctttagactgtgagaacataatgttggtcta-gataatatctgcctaaatagtttgtaattgaaaatacctaaatttaggactaactaattg |
99 |
Q |
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| T |
8689704 |
atactcctctttagactgtgagaacataatgttggtctatgataatatctgcctaaatagtttgtaattgaaaatacctaaatttaggactaactaattg |
8689803 |
T |
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| Q |
100 |
caatttatttataagtttaaagatttgattacaaatgttttaattcaatagtctgattacaattttgtttaaggcaaggagaaaagtatagagactttgt |
199 |
Q |
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| T |
8689804 |
caatttatttataagtttaaagatttgattacaaatgttttaattcaatagtctgattacaattttgtttaaggcaaggagaaaagtatagagattttgt |
8689903 |
T |
|
| Q |
200 |
aattttttgtcttgatatttacaacttatcttgagatgaacccaaagtcattaaatttttaacattcatacccacatttcttatgaagacatcaagacct |
299 |
Q |
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| T |
8689904 |
aattttttgtcttgatatttacaacttatcttgagatgaacccaaagtcattaaatttttaacattcatacccacatttcttatgaagacatcaagacct |
8690003 |
T |
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| Q |
300 |
aattttgttgtttagctcgtgattataatctattagtcccgctctgtgcaatgacctttgct |
361 |
Q |
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| T |
8690004 |
aattttgttg-ttagctcgtgattataatctattagtcccgctctgtgcaatgacctttgct |
8690064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 8713641 - 8713801
Alignment:
| Q |
12 |
tagactgtgagaacataatgttggtcta-gataatatctgcctaaatagtttgtaattgaaaatacctaaatttagg-actaactaattgcaatttattt |
109 |
Q |
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| T |
8713641 |
tagactgtgagcacataatgtttgtctgtgataatatttgcttaaataatttgtaattgaatat--ctaaatttagggactgaataattgcaatttactt |
8713738 |
T |
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| Q |
110 |
ataagtttaaagatttgattacaaatgttttaattcaatagtctgattacaattttgtttaag |
172 |
Q |
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| T |
8713739 |
ataaatttaaagatttgattacaaatgttttaattcaagagcctaattacaattttgtttaag |
8713801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 8670864 - 8671018
Alignment:
| Q |
12 |
tagactgtgagaacataatgttggtcta-gataatatctgcctaaatagtttgtaattgaaaatacctaaatttagg-actaactaattgcaatttattt |
109 |
Q |
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| T |
8670864 |
tagactgtgagcacataatcttggtctatgataatatttgcttcaataatttgtaagt--------ctaaatttagggactgaataattgcaatttattt |
8670955 |
T |
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| Q |
110 |
ataagtttaaagatttgattacaaatgttttaattcaatagtctgattacaattttgtttaag |
172 |
Q |
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| T |
8670956 |
ataaatttaaagagttgattacaaatgttttaattcaagagcctaattacaattttgtttaag |
8671018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 314
Target Start/End: Complemental strand, 23430698 - 23430413
Alignment:
| Q |
24 |
acataatgttggtcta-gataatatctgcctaaatagtttgtaattgaaaatacctaaatttagg-actaactaattgcaatttatt---tataagttta |
118 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
23430698 |
acataatgttggtctatgataatatctgcctaaatagtttgtaattgaaaatacctaaatttagggactaactaattgctatttattatttataagttta |
23430599 |
T |
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| Q |
119 |
aagatttgattacaaatgttttaattcaatagtctgattacaattttgtttaaggcaaggagaaaagtatagagactttgtaattttttgtcttgatatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
23430598 |
aagatttgattacaaatgttttaattcaatagtctgattacaaat---------gcaaggagaaaagtatagagactttgtaattttttgatttgagatt |
23430508 |
T |
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| Q |
219 |
tacaacttatcttgagatgaacccaaagtcattaaatttttaacattcatacccacatttcttatgaagacatcaagacctaattttgttgtttag |
314 |
Q |
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| T |
23430507 |
-acaacttatcttgagatgaacccaaagtcattaaatttttaacattcatacgcacatttcctatgaagacgtcaagacctaattttgttgtttag |
23430413 |
T |
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