View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_high_26 (Length: 318)
Name: NF2701_high_26
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 39802634 - 39802921
Alignment:
| Q |
13 |
agcaaaggccaacaagtaaacaaaacaacaaaaactgaaccagacagttcatacttttgtagtattcatattttgttccctctatgaacgtgcttatttt |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39802634 |
agcaaaagccaacaagtaaacaaaacaacaaaaactgaaccagacagttcatacttttgtagtattcacattttgttccctctatgaacgtgcttatttt |
39802733 |
T |
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| Q |
113 |
ctttttcatattttacaggtgcacacactcttggattctctcactgtgacagattctccaatagaattcaaactccagtggaccccacattgaacaaaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39802734 |
ctttttcatattttacaggtgcacacactcttggattctctcactgtgacagattctccaatagaattcaaactccagtggaccccacattgaacaaaca |
39802833 |
T |
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| Q |
213 |
atatgctgcccagttacaacaaatgtgccctaggaatgttgatccaagaatagccatcaacatggacccaacaactcctagaacattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39802834 |
atatgctgcccagttacaacaaatgtgccctaggaatgttgatccaagaatagccatcaacatggacccaacaactcctagaacattt |
39802921 |
T |
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