View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2701_high_30 (Length: 290)

Name: NF2701_high_30
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2701_high_30
NF2701_high_30
[»] chr8 (5 HSPs)
chr8 (14-265)||(5840833-5841086)
chr8 (14-290)||(5846968-5847239)
chr8 (88-249)||(41424439-41424599)
chr8 (97-196)||(29490443-29490542)
chr8 (43-104)||(21136573-21136634)
[»] chr4 (6 HSPs)
chr4 (151-277)||(55264491-55264618)
chr4 (89-206)||(55397428-55397545)
chr4 (180-242)||(44137511-44137573)
chr4 (76-129)||(7402978-7403031)
chr4 (201-250)||(13119370-13119419)
chr4 (152-249)||(39051192-39051288)
[»] chr3 (9 HSPs)
chr3 (68-241)||(33429014-33429187)
chr3 (138-207)||(16298273-16298342)
chr3 (157-216)||(47337225-47337284)
chr3 (201-282)||(20124051-20124132)
chr3 (201-246)||(33428927-33428972)
chr3 (91-210)||(1163419-1163538)
chr3 (33-132)||(45965808-45965907)
chr3 (232-278)||(47337266-47337312)
chr3 (201-250)||(39840881-39840930)
[»] chr5 (5 HSPs)
chr5 (155-279)||(9900289-9900413)
chr5 (81-278)||(39643042-39643239)
chr5 (148-246)||(33676672-33676769)
chr5 (75-132)||(11275792-11275849)
chr5 (202-250)||(33391425-33391473)
[»] chr2 (7 HSPs)
chr2 (152-276)||(17658871-17658995)
chr2 (182-278)||(8033572-8033668)
chr2 (152-282)||(32502900-32503030)
chr2 (203-249)||(3116829-3116875)
chr2 (95-196)||(22191420-22191521)
chr2 (201-250)||(39760370-39760419)
chr2 (156-196)||(17658978-17659018)
[»] chr7 (2 HSPs)
chr7 (190-282)||(32296325-32296417)
chr7 (138-202)||(32296376-32296440)
[»] chr6 (9 HSPs)
chr6 (88-204)||(17437556-17437670)
chr6 (152-276)||(21394358-21394476)
chr6 (235-290)||(23765861-23765916)
chr6 (201-255)||(8446984-8447038)
chr6 (201-255)||(8455788-8455842)
chr6 (213-290)||(3889982-3890059)
chr6 (90-131)||(19121887-19121928)
chr6 (239-279)||(17437677-17437717)
chr6 (201-245)||(19121979-19122023)
[»] chr1 (7 HSPs)
chr1 (182-279)||(845079-845176)
chr1 (138-219)||(8793048-8793129)
chr1 (88-132)||(7790415-7790459)
chr1 (182-246)||(17347127-17347190)
chr1 (180-277)||(15395318-15395415)
chr1 (201-274)||(40649818-40649891)
chr1 (222-290)||(6219687-6219755)
[»] scaffold0050 (1 HSPs)
scaffold0050 (152-216)||(82111-82175)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 5841086 - 5840833
Alignment:
Q  14 taaatgatacctttattatcgagtaaactattaaattagtctcagttttttaatgtcactttcaaaatagtttttgactctattaatattttaatttagt 113  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5841086 taaatgttacctttattatcgagtaaactattaaattaatctcagtctttgtatgtcactttcaaaatagtttttgactctattaatattttaatttagt 5840987  T
Q  114 ttctatctttatcaaaagtgtcagaattaaattcttcatcatgtgacaaaaataaa--gagaaagagatctaattgaaaaactttcgacaatatttcaac 211  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  5840986 ttctatctttatcaaaagtgtctgaattaagttcttcatcatgtgacaaaaataaagagagaaagagatctaattgagaaactttcgacaatatttcaac 5840887  T
Q  212 atagttcatatctttgttagaagtttctcaattaagtccttcattacgtgacaa 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5840886 atagttcatatctttgttagaagtttctcaattaagtccttcattacgtgacaa 5840833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 5847239 - 5846968
Alignment:
Q  14 taaatgatacctttattatcgagtaaactattaaattagtctcagttttttaatgtcactttcaaaatagtttttgactctattaatattttaatttagt 113  Q
    |||||| |||||||||||||| |||||| |||||||||||||  ||        |||||| |||||||||||||||||||||||||||||||||||||||    
T  5847239 taaatgttacctttattatcgcgtaaaccattaaattagtctatgtc-------gtcactctcaaaatagtttttgactctattaatattttaatttagt 5847147  T
Q  114 ttctatctttatcaaaagtgtcagaattaaattcttcatcatgtgacaaaaataaagaga--aagagatctaattgaaaaactttcgacaatatttcaac 211  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  5847146 ttctatctttatcaaaagtgtctgaattaagttcttcatcatgtgacaaaaataaagagagaaagagatctaattgagaaactttcgacaatatttcaac 5847047  T
Q  212 atagttcatatctttgttagaagtttctcaattaagtccttcattacgtgacaaaaacatagagacaatgacttaattg 290  Q
    ||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  5847046 atagttcatatctttattagaaatttctcaattaagtccctcattacgtgacaaaaacatagagacaatgacctaattg 5846968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 41424439 - 41424599
Alignment:
Q  88 tgactctattaatattttaatttagtttctatctttatcaaaagtgtcagaattaaattcttcatcatgtgacaaaaataaagagaaagagatctaattg 187  Q
    |||||||||||||||||||| ||||||| ||| ||| |||||| | |   |||||| |   || || ||||||||||| ||| |||||  ||||||||||    
T  41424439 tgactctattaatattttaaattagtttttatttttgtcaaaaatttttcaattaagtctatcgtcttgtgacaaaaacaaatagaaaaggatctaattg 41424538  T
Q  188 aaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaagtc 249  Q
     ||  |||| || ||||||| || ||||||||| ||||||| | |||||| |||||||||||    
T  41424539 gaag-cttttgagaatatttaaaaatagttcatgtctttgtcaaaagtttttcaattaagtc 41424599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 29490542 - 29490443
Alignment:
Q  97 taatattttaatttagtttctatctttatcaaaagtgtcagaattaaattcttcatcatgtgacaaaaataaagagaaagagatctaattgaaaaacttt 196  Q
    |||||||| ||  |||| |||||||||||||||||| ||  || |||||   || ||||||| |||||| | ||||| |||||||||||||| |||||||    
T  29490542 taatatttcaaaatagtgtctatctttatcaaaagtttctcaaataaatgtctcgtcatgtgccaaaaacacagagacagagatctaattgagaaacttt 29490443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 21136573 - 21136634
Alignment:
Q  43 attaaattagtctcagttttttaatgtcactttcaaaatagtttttgactctattaatattt 104  Q
    |||||||| ||||| || |||||| |||| | ||||| |||| |||||||||||||||||||    
T  21136573 attaaatttgtctctgtcttttaaagtcattctcaaattagtctttgactctattaatattt 21136634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 151 - 277
Target Start/End: Original strand, 55264491 - 55264618
Alignment:
Q  151 atcatgtgacaaaaata-aagagaaagagatctaattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaagtc 249  Q
    ||||||||||||||| | ||||||||||  ||||||||| ||||||| ||||||||||||| |||||  || ||||||| | ||||||||||||||||||    
T  55264491 atcatgtgacaaaaaaagaagagaaagaagtctaattgagaaacttttgacaatatttcaaaatagtcaatgtctttgtcaaaagtttctcaattaagtc 55264590  T
Q  250 cttcattacgtgacaaaaacatagagac 277  Q
    | |    | |||||||||||||||||||    
T  55264591 catatccatgtgacaaaaacatagagac 55264618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 55397428 - 55397545
Alignment:
Q  89 gactctattaatattttaatttagtttctatctttatcaaaagtgtcagaattaaattcttcatcatgtgacaaaaataaagagaaagagatctaattga 188  Q
    |||| ||||||||||||||  |||||| ||||||| | |||||| |   |||| ||| | ||||||||||||||||| |||||||||  ||||||||  |    
T  55397428 gactttattaatattttaaaatagtttttatctttgttaaaagttttttaatttaatccctcatcatgtgacaaaaacaaagagaaatggatctaatgta 55397527  T
Q  189 aaaactttcgacaatatt 206  Q
    | |||||| |||||||||    
T  55397528 agaacttttgacaatatt 55397545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 44137511 - 44137573
Alignment:
Q  180 tctaattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaa 242  Q
    ||||||||| ||||||| ||||||||||||| |||||| ||  |||||| | |||||||||||    
T  44137511 tctaattgagaaacttttgacaatatttcaaaatagtttatgcctttgtcaaaagtttctcaa 44137573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 7402978 - 7403031
Alignment:
Q  76 caaaatagtttttgactctattaatattttaatttagtttctatctttatcaaa 129  Q
    |||| ||||||  ||||||||||||||||||| ||||| ||| |||||||||||    
T  7402978 caaattagtttccgactctattaatattttaaattagtctctttctttatcaaa 7403031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 13119419 - 13119370
Alignment:
Q  201 aatatttcaacatagttcatatctttgttagaagtttctcaattaagtcc 250  Q
    |||||||||| ||||| | | ||||||||| |||||||||||||||||||    
T  13119419 aatatttcaaaatagtccctgtctttgttaaaagtttctcaattaagtcc 13119370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 39051192 - 39051288
Alignment:
Q  152 tcatgtgacaaaaataaagagaaagagatctaattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaagtc 249  Q
    |||||||||||||||| | ||| ||||||||| |||| ||||||| || |||||||||| |||||   | ||||  | | ||||||||||||||||||    
T  39051192 tcatgtgacaaaaatatatagacagagatctagttgagaaacttt-gataatatttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtc 39051288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 241
Target Start/End: Complemental strand, 33429187 - 33429014
Alignment:
Q  68 gtcactttcaaaatagtttttgactctattaatattttaatttagtttctatctttatcaaaagtgtcagaattaaattcttcatcatgtgacaaaaata 167  Q
    |||||||||||| ||||  |  ||||||||||||||||||  || |   |||||||||||||||| |   |||||| |  ||| |||||||||||||| |    
T  33429187 gtcactttcaaattagtcatcaactctattaatattttaaaataatcaatatctttatcaaaagtttttcaattaagtctttcgtcatgtgacaaaaaca 33429088  T
Q  168 aagagaaagagatctaattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctca 241  Q
    ||||||||   |||||||||| |||| || ||||||||||||| |||||| |  ||||||| | ||||||||||    
T  33429087 aagagaaatgaatctaattgagaaacatttgacaatatttcaaaatagtttacgtctttgtcaaaagtttctca 33429014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 16298273 - 16298342
Alignment:
Q  138 aattaaattcttcatcatgtgacaaaaataaagagaaagagatctaattgaaaaactttcgacaatattt 207  Q
    |||||||| | ||||||| ||||||||||| ||||| |  ||||||||||||||||||| ||||||||||    
T  16298273 aattaaatccctcatcatatgacaaaaatatagagacattgatctaattgaaaaactttggacaatattt 16298342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 47337284 - 47337225
Alignment:
Q  157 tgacaaaaataaagagaaagagatctaattgaaaaactttcgacaatatttcaacatagt 216  Q
    ||||||||| | ||||| || ||||||||||||||||||| ||||||||||||| |||||    
T  47337284 tgacaaaaacatagagacagggatctaattgaaaaacttttgacaatatttcaaaatagt 47337225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 20124051 - 20124132
Alignment:
Q  201 aatatttcaacatagttcatatctttgttagaagtttctcaattaagtccttcattacgtgacaaaaacatagagacaatga 282  Q
    |||||||||| ||||||||| ||||||| | ||||||||||||||||||  || | | || ||||||||||  |||||||||    
T  20124051 aatatttcaaaatagttcatctctttgtcaaaagtttctcaattaagtctctcgtcatgtaacaaaaacatcaagacaatga 20124132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 33428927 - 33428972
Alignment:
Q  201 aatatttcaacatagttcatatctttgttagaagtttctcaattaa 246  Q
    |||||||||| ||||||||||||||||| | |||||||||||||||    
T  33428927 aatatttcaaaatagttcatatctttgtcaaaagtttctcaattaa 33428972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 1163419 - 1163538
Alignment:
Q  91 ctctattaatattttaatttagtttctatctttatcaaaagtgtcagaattaaattcttcatcatgtgacaaaaataaagagaaagagatctaattgaaa 190  Q
    |||||||||||||||||  |||||| | | ||| |||||||| ||  |||||| |   || |||||||| ||||||| ||| | | || |||||||||||    
T  1163419 ctctattaatattttaaaatagtttatgtgtttgtcaaaagtttctcaattaagtctctcgtcatgtgaaaaaaatatagaaacataggtctaattgaaa 1163518  T
Q  191 aactttcgacaatatttcaa 210  Q
    |||||| |||| ||||||||    
T  1163519 aacttttgacagtatttcaa 1163538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 45965907 - 45965808
Alignment:
Q  33 cgagtaaactattaaattagtctcagttttttaatgtcactttcaaaatagtttttgactctattaatattttaatttagtttctatctttatcaaaagt 132  Q
    |||||||||||| ||||| ||| | || |||  | |||||| ||||| |||||| ||||||||||||||||| ||  |||||  ||||||| ||||||||    
T  45965907 cgagtaaactatcaaattggtccctgtatttgtaagtcactctcaaattagtttgtgactctattaatatttcaaactagttattatctttttcaaaagt 45965808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 47337312 - 47337266
Alignment:
Q  232 aagtttctcaattaagtccttcattacgtgacaaaaacatagagaca 278  Q
    ||||||||||||||||||| || |||  |||||||||||||||||||    
T  47337312 aagtttctcaattaagtccctcgttatatgacaaaaacatagagaca 47337266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 39840930 - 39840881
Alignment:
Q  201 aatatttcaacatagttcatatctttgttagaagtttctcaattaagtcc 250  Q
    |||||||||| ||||| | ||||||||||| || ||||||||||||||||    
T  39840930 aatatttcaaaatagtccctatctttgttaaaattttctcaattaagtcc 39840881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 279
Target Start/End: Complemental strand, 9900413 - 9900289
Alignment:
Q  155 tgtgacaaaaataaagagaaagagatctaattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaagtccttca 254  Q
    ||||| ||||| ||||||||||||||||||| || ||||||| |||||||| |||| ||||||||| | ||||| | || |||||||||||| ||| |      
T  9900413 tgtgataaaaacaaagagaaagagatctaatcgagaaactttggacaatatctcaaaatagttcatgtttttgtcaaaaatttctcaattaaatcccttg 9900314  T
Q  255 ttacgtgacaaaaacatagagacaa 279  Q
      | |||||||||||||||| ||||    
T  9900313 acatgtgacaaaaacatagatacaa 9900289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 278
Target Start/End: Original strand, 39643042 - 39643239
Alignment:
Q  81 tagtttttgactctattaatattttaatttagtttctatctttatcaaaagtgtcagaattaaattcttcatcatgtgacaaaaataaagagaaagagat 180  Q
    |||||| ||||||||||||||||||||  |  ||  | |||||||||||||| |   |||||| |  ||| |||||||||||||| | |||||  |||||    
T  39643042 tagtttatgactctattaatattttaaaatgcttcttgtctttatcaaaagtttatcaattaagtctttcgtcatgtgacaaaaacatagagacggagat 39643141  T
Q  181 ctaattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaagtccttcattacgtgacaaaaacatagagaca 278  Q
     ||||||| ||| ||| || |||||||||| |||||  || ||| ||| | ||||||||| ||||||    || | | ||||||||||||||||||||    
T  39643142 ttaattgagaaatttttgataatatttcaaaatagtatatgtctctgtcaaaagtttctcgattaagcgtatcgtcatgtgacaaaaacatagagaca 39643239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 33676769 - 33676672
Alignment:
Q  148 ttcatcatgtgacaaaaataaagagaaagagatctaattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaa 246  Q
    |||||||||||||||||| | ||||| |||||| ||||| ||| ||||| ||  |||||| || |||||   ||| ||||||| |||||||||||||||    
T  33676769 ttcatcatgtgacaaaaacatagagacagagatttaattaaaatacttttga-tatattttaaaatagtctctatttttgttaaaagtttctcaattaa 33676672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 11275849 - 11275792
Alignment:
Q  75 tcaaaatagtttttgactctattaatattttaatttagtttctatctttatcaaaagt 132  Q
    ||||| |||| | ||||| |||||||||||||| ||||||||||| ||| ||||||||    
T  11275849 tcaaattagtctctgactttattaatattttaaattagtttctatatttgtcaaaagt 11275792  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 33391425 - 33391473
Alignment:
Q  202 atatttcaacatagttcatatctttgttagaagtttctcaattaagtcc 250  Q
    |||||||||  |||||||| ||||||||| |||||||||||||| ||||    
T  33391425 atatttcaaattagttcatgtctttgttaaaagtttctcaattatgtcc 33391473  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 276
Target Start/End: Original strand, 17658871 - 17658995
Alignment:
Q  152 tcatgtgacaaaaataaagagaaagagatctaattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaagtcct 251  Q
    |||||||||||||| |||||||||  ||||||||||||||  ||| ||||||||||||| |||||  |||||||||| | |||||| ||||  |||||      
T  17658871 tcatgtgacaaaaacaaagagaaaatgatctaattgaaaagattttgacaatatttcaaaatagtcaatatctttgtcaaaagtttttcaaccaagtctc 17658970  T
Q  252 tcattacgtgacaaaaacatagaga 276  Q
    || | | |||||||||||| |||||    
T  17658971 tcgtcaagtgacaaaaacaaagaga 17658995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 278
Target Start/End: Original strand, 8033572 - 8033668
Alignment:
Q  182 taattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaagtccttcattacgtgacaaaaacatagagaca 278  Q
    ||||||| ||||||| |||||| |||||| ||| | | | ||||||||| ||||||||||||||||||  || | |  |||||||||||||||||||    
T  8033572 taattgagaaacttttgacaatctttcaaaataatccttgtctttgttaaaagtttctcaattaagtctctcgtcatatgacaaaaacatagagaca 8033668  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 282
Target Start/End: Complemental strand, 32503030 - 32502900
Alignment:
Q  152 tcatgtgacaaaaataaagagaaagagatctaattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaagtcct 251  Q
    |||| ||| ||||| | ||||| |||||||||||||| ||||||| || |||||||||| |||||   | ||||||| | || ||| |||||||| |       
T  32503030 tcatatgataaaaacatagagacagagatctaattgataaacttttgataatatttcaaaatagtctttgtctttgtcaaaattttttcaattaaatgtc 32502931  T
Q  252 tcattacgtgacaaaaacatagagacaatga 282  Q
    || | | ||||||||||||||||||||||||    
T  32502930 tcgtcatgtgacaaaaacatagagacaatga 32502900  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 3116875 - 3116829
Alignment:
Q  203 tatttcaacatagttcatatctttgttagaagtttctcaattaagtc 249  Q
    ||||| || ||||||||||||||||| | ||||||||||||||||||    
T  3116875 tattttaaaatagttcatatctttgtcaaaagtttctcaattaagtc 3116829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 22191420 - 22191521
Alignment:
Q  95 attaatattttaatttagtttctatctttatcaaaagtgtcagaattaaattcttcatcatgtgacaaaaataaagagaaagagatctaattgaaaaact 194  Q
    |||||||||||||  |||| | | ||||| |||||||| ||   ||||| | | || |||||||||||||||||||||| |   ||||||||||||||||    
T  22191420 attaatattttaaaatagtctttgtctttgtcaaaagtttctctattaagtccctcgtcatgtgacaaaaataaagagatatgaatctaattgaaaaact 22191519  T
Q  195 tt 196  Q
    ||    
T  22191520 tt 22191521  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 39760419 - 39760370
Alignment:
Q  201 aatatttcaacatagttcatatctttgttagaagtttctcaattaagtcc 250  Q
    |||||||||| ||||||||||||||||| | || | ||||||||||||||    
T  39760419 aatatttcaaaatagttcatatctttgtcaaaaatctctcaattaagtcc 39760370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 17658978 - 17659018
Alignment:
Q  156 gtgacaaaaataaagagaaagagatctaattgaaaaacttt 196  Q
    |||||||||| |||||||||  |||||||||||||||||||    
T  17658978 gtgacaaaaacaaagagaaaacgatctaattgaaaaacttt 17659018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 32296325 - 32296417
Alignment:
Q  190 aaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaagtccttcattacgtgacaaaaacatagagacaatga 282  Q
    ||||||| |||||||||| || ||| ||  ||| ||||||| ||||||||||||||| || |||||   ||||||||||||||||||||||||    
T  32296325 aaacttttgacaatattttaaaataatttgtatatttgttaaaagtttctcaattaaatcattcatcgtgtgacaaaaacatagagacaatga 32296417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 32296376 - 32296440
Alignment:
Q  138 aattaaattcttcatcatgtgacaaaaataaagagaaagagatctaattgaaaaactttcgacaa 202  Q
    ||||||||  |||||| ||||||||||| | ||||| |  ||||||||||||||||||| |||||    
T  32296376 aattaaatcattcatcgtgtgacaaaaacatagagacaatgatctaattgaaaaacttttgacaa 32296440  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 17437556 - 17437670
Alignment:
Q  88 tgactctattaatattttaatttagtttctatctttatcaaaagtgtcagaattaaattcttcatcatgtgacaaaaataaagagaaagagatctaattg 187  Q
    ||||||||||||||| | |||||||| | | |||||||||||||| ||  ||||||   |||| |||||||||||||| ||  ||||| | || ||||||    
T  17437556 tgactctattaatatatcaatttagtctttgtctttatcaaaagtttctcaattaaggccttcgtcatgtgacaaaaacaa--agaaatatatttaattg 17437653  T
Q  188 aaaaactttcgacaata 204  Q
    ||||||||| |||||||    
T  17437654 aaaaacttttgacaata 17437670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 276
Target Start/End: Original strand, 21394358 - 21394476
Alignment:
Q  152 tcatgtgacaaaaataaagagaaagagatctaattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaagtcct 251  Q
    |||||||||||||| |  |||| || ||| ||||||| ||||||| ||||||||||||| ||||      ||||||||| ||||||||||||||||| |     
T  21394358 tcatgtgacaaaaagaccgagacagtgatgtaattgagaaacttttgacaatatttcaaaatag------tctttgttaaaagtttctcaattaagtacc 21394451  T
Q  252 tcattacgtgacaaaaacatagaga 276  Q
    || | | |||| |||||||||||||    
T  21394452 tcgtcatgtgataaaaacatagaga 21394476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 23765916 - 23765861
Alignment:
Q  235 tttctcaattaagtccttcattacgtgacaaaaacatagagacaatgacttaattg 290  Q
    |||||||||||||||| | || | |||||||||||||| |||||||||| ||||||    
T  23765916 tttctcaattaagtcccttatcatgtgacaaaaacataaagacaatgacctaattg 23765861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 8446984 - 8447038
Alignment:
Q  201 aatatttcaacatagttcatatctttgttagaagtttctcaattaagtccttcat 255  Q
    |||||||||| |||||  || ||||||||| |||||| |||||||||||||||||    
T  8446984 aatatttcaaaatagtcaatgtctttgttaaaagtttttcaattaagtccttcat 8447038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 8455788 - 8455842
Alignment:
Q  201 aatatttcaacatagttcatatctttgttagaagtttctcaattaagtccttcat 255  Q
    |||||||||| |||||  || ||||||||| |||||| |||||||||||||||||    
T  8455788 aatatttcaaaatagtcaatgtctttgttaaaagtttttcaattaagtccttcat 8455842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 3890059 - 3889982
Alignment:
Q  213 tagttcatatctttgttagaagtttctcaattaagtccttcattacgtgacaaaaacatagagacaatgacttaattg 290  Q
    |||||||| ||||||| | |||||||||||||| |||| || ||  |||||||||||||  |||||| ||| ||||||    
T  3890059 tagttcatgtctttgtcaaaagtttctcaattaggtccctcgttgtgtgacaaaaacatgaagacaaggacctaattg 3889982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 19121887 - 19121928
Alignment:
Q  90 actctattaatattttaatttagtttctatctttatcaaaag 131  Q
    ||||||||||||||||||  |||||||||||||| |||||||    
T  19121887 actctattaatattttaaactagtttctatctttgtcaaaag 19121928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 17437677 - 17437717
Alignment:
Q  239 tcaattaagtccttcattacgtgacaaaaacatagagacaa 279  Q
    |||||||||||| || ||| |||||||||||||||||||||    
T  17437677 tcaattaagtccctccttatgtgacaaaaacatagagacaa 17437717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 19122023 - 19121979
Alignment:
Q  201 aatatttcaacatagttcatatctttgttagaagtttctcaatta 245  Q
    ||||||||||  ||||| || ||||||||||||||||||||||||    
T  19122023 aatatttcaaactagtttatgtctttgttagaagtttctcaatta 19121979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 845176 - 845079
Alignment:
Q  182 taattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaagtccttcattacgtgacaaaaacatagagacaa 279  Q
    ||||||| ||||||| || |||||||||| ||| |   | ||||||| |||||||||||||||||||   |||| | |||||||||||||||||||||    
T  845176 taattgagaaacttttgataatatttcaaaataatatttgtctttgtcagaagtttctcaattaagtgtctcatcatgtgacaaaaacatagagacaa 845079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 8793048 - 8793129
Alignment:
Q  138 aattaaattcttcatcatgtgacaaaaataaagagaaagagatctaattgaaaaactttcgacaatatttcaacatagttca 219  Q
    |||||| | |||| |||||||||||||| ||||| |||| ||| ||||||| ||||||| || |||||||||| ||||||||    
T  8793048 aattaagtccttcgtcatgtgacaaaaacaaagaaaaagggatataattgagaaacttttgataatatttcaaaatagttca 8793129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 7790459 - 7790415
Alignment:
Q  88 tgactctattaatattttaatttagtttctatctttatcaaaagt 132  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  7790459 tgactctattaatatttcaaattagtttctatctttatcaaaagt 7790415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 17347127 - 17347190
Alignment:
Q  182 taattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaa 246  Q
    |||||||||||||||||| |||||| ||| |||||| || ||||||||| |||||||||||||||    
T  17347127 taattgaaaaactttcgataatattacaaaatagtttatgtctttgtta-aagtttctcaattaa 17347190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 15395318 - 15395415
Alignment:
Q  180 tctaattgaaaaactttcgacaatatttcaacatagttcatatctttgttagaagtttctcaattaagtccttcattacgtgacaaaaacatagagac 277  Q
    ||||||||| |||  || |||||||||||||  |||||||| ||||| | | |||||||||||||||||  |||  || || ||||||||||||||||    
T  15395318 tctaattgagaaaaatttgacaatatttcaaagtagttcatgtctttatcaaaagtttctcaattaagtgtttcgctatgtaacaaaaacatagagac 15395415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 40649818 - 40649891
Alignment:
Q  201 aatatttcaacatagttcatatctttgttagaagtttctcaattaagtccttcattacgtgacaaaaacataga 274  Q
    |||||||||| || || ||| ||||||||| ||||||||||||||||||| || | | |||| |||||||||||    
T  40649818 aatatttcaaaatggtacatgtctttgttaaaagtttctcaattaagtccctcgtcatgtgaaaaaaacataga 40649891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 6219687 - 6219755
Alignment:
Q  222 tctttgttagaagtttctcaattaagtccttcattacgtgacaaaaacatagagacaatgacttaattg 290  Q
    ||||||| | || ||||||||||| |||| |||||| |||||||||||||| ||||  |||| ||||||    
T  6219687 tctttgtcaaaaatttctcaattaggtccctcattatgtgacaaaaacataaagacggtgacctaattg 6219755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 82175 - 82111
Alignment:
Q  152 tcatgtgacaaaaataaagagaaagagatctaattgaaaaactttcgacaatatttcaacatagt 216  Q
    |||||||||||||| |  |||| |  ||||||||||| ||||||| ||||||||||||| |||||    
T  82175 tcatgtgacaaaaaaattgagacaatgatctaattgagaaacttttgacaatatttcaaaatagt 82111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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