View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_high_36 (Length: 242)
Name: NF2701_high_36
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_high_36 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0021 (1 HSPs) |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 37263488 - 37263729
Alignment:
| Q |
1 |
acaagctaatcgaaatactaagaataataattggagttgtgatgtgaaattttgttaacccatatgtataatttatagacctatttcataggataatttg |
100 |
Q |
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| T |
37263488 |
acaagctaatcgaaatactaagaataataattggagttgtgatgtgaaattttgttaacccatatgtataatttatagacatatttcataggataatttg |
37263587 |
T |
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| Q |
101 |
gtaaaataaccataattgttttcaatattcttgaaaatacaataaaaaacataagatcatttgagtatcatttttatttggcaattaaaataatcattta |
200 |
Q |
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| T |
37263588 |
gtaaaataaccataattgttttcaatattcttgaaaatacaataaaaaacataagatcatttgagtatcatttttatttggcaattaaaataatcattta |
37263687 |
T |
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| Q |
201 |
ataaattaattttggctcattattcttataggttgaccaaat |
242 |
Q |
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| T |
37263688 |
ataaattaattttggctcattattcttataggttgaccaaat |
37263729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 43518598 - 43518523
Alignment:
| Q |
38 |
tgtgatgtgaaattttgttaacccatatgtataatttatagacctatttcataggataatttggtaaaataaccata |
114 |
Q |
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| T |
43518598 |
tgtgatgtaaaattatgttaatccataggtctaatttatagtc-tgtttcacgggacaatttggtaaaataaccata |
43518523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 130332 - 130256
Alignment:
| Q |
33 |
ggagttgtgatgtgaaattttgttaacccatatgtataatttatagacctatttcataggataatttggtaaaataac |
110 |
Q |
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| T |
130332 |
ggagttgtgatgtgagatgatgttaacc-atatgtctaatttatagacatatttcttagggtaatttggtaaaataac |
130256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 36721432 - 36721359
Alignment:
| Q |
33 |
ggagttgtgatgtgaaattttgttaacccatatgtataatttatagacctatttcataggataatttggtaaaataac |
110 |
Q |
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| T |
36721432 |
ggagttgtgatgtgag---ttgttaacc-atatgtctaatttatagacatatttcatagggtagtttggtaaaataac |
36721359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 27345325 - 27345400
Alignment:
| Q |
33 |
ggagttgtgatgtgaaattttgttaacccatatgtataatttatagacctatttcataggataatttggtaaaataa |
109 |
Q |
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| T |
27345325 |
ggagttgtgatgtgagatgatgttaacc-atatgtctaatttatagacatttttcttaaggtaatttggtaaaataa |
27345400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 48771889 - 48771804
Alignment:
| Q |
37 |
ttgtgatgtgaaattttgttaacccatatgtataatttatagacctatttcataggataatttggtaaaataaccataattgtttt |
122 |
Q |
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| T |
48771889 |
ttgtgatgtgaaattatgtcaatccatatttctaatttatagacttgtttcacactgtaatttggtataataaccattattttttt |
48771804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 15955 - 15870
Alignment:
| Q |
37 |
ttgtgatgtgaaattttgttaacccatatgtataatttatagacctatttcataggataatttggtaaaataaccataattgtttt |
122 |
Q |
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| T |
15955 |
ttgtgatgtgaaattatgtcaatccatatttctaatttatagacttgtttcacactgtaatttggtataataaccattattttttt |
15870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 7830532 - 7830617
Alignment:
| Q |
37 |
ttgtgatgtgaaattttgttaacccatatgtataatttatagacctatttcataggataatttggtaaaataaccataattgtttt |
122 |
Q |
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| T |
7830532 |
ttgtgatgtgaaattatgtcaatccatatttctaatttatagacttgtttcacaccgtaatttggtataataaccattattttttt |
7830617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 13237346 - 13237270
Alignment:
| Q |
33 |
ggagttgtgatgtgaaattttgttaacccatatgtataatttatagacctatttcataggataatttggtaaaataac |
110 |
Q |
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| T |
13237346 |
ggagttgtgatgtgagatgatgttgacc-atatgtctaatttatagacatttttcttaaggtaatttggtaaaataac |
13237270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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