View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_high_7 (Length: 543)
Name: NF2701_high_7
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 138 - 528
Target Start/End: Complemental strand, 40796587 - 40796197
Alignment:
| Q |
138 |
tttgacaaattggagctttgtaaagagaataaacccaaacctgaatccggcttaatcacttaacagctatggttgtactaaacagaaaataatagtacta |
237 |
Q |
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| T |
40796587 |
tttgacaaattggagctttgtaaagagaataaacccaaacctgaatccggcttaatcacttaacagctatggttgtacaaaacagaaaataatagtacta |
40796488 |
T |
|
| Q |
238 |
attgttttactcaaacacattcaacatcagatgataaacaataaaacaacatcaaaatacattgagtgtttctgttgccaaacaacataaacatttacag |
337 |
Q |
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| T |
40796487 |
attgttttactcaaacacattctacatcagatgataaacaataaatcaacatcaaaatacattgagtgtttctgttgtcaaacaacataaacatttacag |
40796388 |
T |
|
| Q |
338 |
ccaccgaaaggaattagatcaggtattcttgacaaatgcaataagacagataatagtttatgtaaaatattgagtattgaataaaacgcaattataagca |
437 |
Q |
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| T |
40796387 |
ccaccgaaaggaattagatcaggtattcttgacaaatgcaataagacagataatagtttatgtaaaatattgagtattgaatgaaacgcaattgtaagca |
40796288 |
T |
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| Q |
438 |
tacataaactagcatcttaatttgtcgagaaactcaaaatattcagaatcaaatgttgaagcagttctgagttgtcggtaacagtttgaat |
528 |
Q |
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| T |
40796287 |
tacataaactagcatcttaatttgtcgagaaactcaaaatattcagaatcaaatgttgaagcagttctgagttgtcggtaacagtttgaat |
40796197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 40796769 - 40796629
Alignment:
| Q |
1 |
aacaacgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaagactggtaggcttagagaggatacatacatgcttataggctatagca |
100 |
Q |
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| T |
40796769 |
aacaacgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaagactggtaggcttagagaggatacatacatgcttataggctatagca |
40796670 |
T |
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| Q |
101 |
ctctccctcatgtaagcagacacggaactcggtgcaatttg |
141 |
Q |
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| T |
40796669 |
ctctccctcatgtaagcagacacagaactcggtgcaatttg |
40796629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18307611 - 18307559
Alignment:
| Q |
1 |
aacaacgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaa |
53 |
Q |
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| T |
18307611 |
aacaatgccctaaagtaatgaaagcacatgacaccgaaatacaaaacaacaaa |
18307559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 783298 - 783351
Alignment:
| Q |
1 |
aacaacgccctaaaagaatgaaagcacatgac-accagaatacaaaacaacaaa |
53 |
Q |
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||||||||| ||||||||||||||||||||| || | |||||||||||||||| |
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| T |
783298 |
aacaacgccggaaaagaatgaaagcacatgacaacgaaaatacaaaacaacaaa |
783351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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