View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2701_low_10 (Length: 521)
Name: NF2701_low_10
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 27 - 504
Target Start/End: Complemental strand, 13122883 - 13122422
Alignment:
| Q |
27 |
caagaaaagaaattctatacattcatggagttttaaaccaacttgcaaattaacttctctctagttgaatatcttgaaagaatgtccatttatgcgaaat |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13122883 |
caagaaaagaaattctatacattcatggagttttaaaccaacttgcaaattaacatctctctagttgaatatcttgaaagaatgtccatttatgcgaagt |
13122784 |
T |
|
| Q |
127 |
ttatgaaagaactcctatctnnnnnnnngagactacccaaacaagagtttgtaatgttgaccaaagattgtagcactatcttacaaatgagggttccaca |
226 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13122783 |
ttatgaaagaactcctatctaaaaaaaagagactacccaaacaagagtttgtaatgttgaccaaagattgtagcactatcttacaaatgagggttccaca |
13122684 |
T |
|
| Q |
227 |
aaagaaaaccgacctaggaaggttcaccattccatgctcaataggaaagctatctatacaggaaaggcttgtccgatctaggagagagtattggtttggt |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13122683 |
aaagaaaaccgacctaggaaggttcaccattccatgctcaataggaaagttatctatacaggaaaggcttgtccgatctaggagagagtattggtttgaa |
13122584 |
T |
|
| Q |
327 |
gccactttctatgatgaaaaatcttgaagggataaccattaaacatgaaagaataacattttatctggcagaccgatctgtcaagtacacatatggagta |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13122583 |
gccactttctatgatgaaaaatcttgaagg----------------gaaagaataacattttatctggcagaccgatctgtcaagtacacatatggagta |
13122500 |
T |
|
| Q |
427 |
gttgaagatgtctttgaacaggttgacaaatccgtcttctctgttgattttgtaatcatggatatggaagaagatgat |
504 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13122499 |
gttgaagatgtcttggaacaggttgacaaatccgtcttctctgttgattttgtaatcatggatatggaagaagatgat |
13122422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 187 - 504
Target Start/End: Complemental strand, 13092778 - 13092461
Alignment:
| Q |
187 |
ccaaagattgtagcactatcttacaaatgagggttccacaaaagaaaaccgacctaggaaggttcaccattccatgctcaataggaaagctatctataca |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
13092778 |
ccaaagattgtagcactatcttacaaatgagggttccacaaaagaaaaccgacctaagaagtttcaccattccatgctcaattggaaatctatctatacg |
13092679 |
T |
|
| Q |
287 |
ggaaaggcttgtccgatctaggagagagtattggtttggtgccactttctatgatgaaaaatcttgaagggataaccattaaacatgaaagaataacatt |
386 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||| || ||| ||||||||||||||||||||| |||| | |||||| ||||| ||||| | |
|
|
| T |
13092678 |
ggaacggcttgtgcgatctaggagagagtattgttttgatgacacacattatgatgaaaaatcttgaaggaataatcgttaaacttgaaaaaataattct |
13092579 |
T |
|
| Q |
387 |
ttatctggcagaccgatctgtcaagtacacatatggagtagttgaagatgtctttgaacaggttgacaaatccgtcttctctgttgattttgtaatcatg |
486 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | | | | |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
13092578 |
ttatctggcagaccgatctgtcaagtacccatatggagtaattgaagatgtcttggtatatggtgacaaattcgtcttccctgttgattttgtaatcatg |
13092479 |
T |
|
| Q |
487 |
gatatggaagaagatgat |
504 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
13092478 |
gatatggaagtagatgat |
13092461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University