View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2701_low_15 (Length: 437)
Name: NF2701_low_15
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 3377278 - 3377688
Alignment:
| Q |
11 |
agaatattgctatgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcatatcaagcgccaccattagtca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3377278 |
agaatattgctatgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcatatcaagtgccaccattagtca |
3377377 |
T |
|
| Q |
111 |
gcctcaatcgtctgaaaaattatccacatatgaggtgaagcatttctatgatctgatggtagtattaatggtatcaattttcctaattcaatctattaat |
210 |
Q |
| |
|
|||||||||| | |||||||| || |||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||| | || |
|
|
| T |
3377378 |
gcctcaatcggcggaaaaattgtcaacatatgaggtgaagcatttctataatctgatagtagtattaatggtatcagttttcctaattcaatctactgat |
3377477 |
T |
|
| Q |
211 |
atggagtttaggttatatagcttgtattcaaatttcgtttgcctgtttttatgtgtttctttaaataatgtaaattgaatttcagggtaaatatgaaatt |
310 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3377478 |
atggagtttaggttaaatagcttgtattcaaatttcatttgcctgtttttatgtgtttctttaaataatgtaaattgaatttcagggtaaatatgaaaat |
3377577 |
T |
|
| Q |
311 |
atatctttatctggctcattcatgccaaacgaaagtcgcggtggtggcatcagtgtttctttagcgggtctagatggacatgtcattggaggttgcgtag |
410 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| ||| ||| || |||||||||||||| ||| || |||||||||| ||||||||||||||| |
|
|
| T |
3377578 |
atatctttatctggctcatccatgccaaacggaagtcgcagtgttggtatgagtgtttctttagctggtttatatggacatgttgttggaggttgcgtag |
3377677 |
T |
|
| Q |
411 |
ctggtccattg |
421 |
Q |
| |
|
|| |||||||| |
|
|
| T |
3377678 |
cttgtccattg |
3377688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 3372420 - 3372829
Alignment:
| Q |
11 |
agaatattgctatgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcatatcaagcgccaccattagtca |
110 |
Q |
| |
|
||||| || ||||||| |||||||||| |||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
3372420 |
agaatgttactatgaaggtaatgtcatcgtgtcggaaagaaccagaagctatatgcattctatctgcaattggagtcatatcaagcgcaaccattagtca |
3372519 |
T |
|
| Q |
111 |
gcctcaatcgtctgaaaaattatccacatatgaggtgaagcatttctatgatctgatggtagtattaatggtatcaattttcctaattcaatctattaat |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||| | ||| ||| ||| ||||||| | ||| ||||||||||||||| || ||| |
|
|
| T |
3372520 |
gcctcactcgtctgaaaaattatccacatatgaggtgcagcatttctgtaatc-gatagtaatattaatagcttcacttttcctaattcaatatactaaa |
3372618 |
T |
|
| Q |
211 |
atggagtttaggttatatagcttgtattcaaatttcgtttgcctgtttttatgtgtttctttaaataatgtaaattgaatttcagggtaaatatgaaatt |
310 |
Q |
| |
|
|||||||| | |||||||| ||||||||| || | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3372619 |
atggagttaacattatatagtttgtattcatatgttgtttgcctattttgatgtgtttctttaaataatgtaaattgaatttcagggtaaatattgtatt |
3372718 |
T |
|
| Q |
311 |
atatctttatctggctcattcatgccaaacgaaagtcgcggtggtggcatcagtgtttctttagcgggtctagatggacatgtcattggaggttgcgtag |
410 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
3372719 |
gtatctttatctggcccattcatgccaaacgaaagtcgcggtggtggcatgagtatttctttaatgggtctagatggacatgttgttgaaggttgcgtag |
3372818 |
T |
|
| Q |
411 |
ctggtccattg |
421 |
Q |
| |
|
||||||||||| |
|
|
| T |
3372819 |
ctggtccattg |
3372829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 3402611 - 3402742
Alignment:
| Q |
20 |
ctatgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcatatcaagcgccaccattagtcagcctcaatc |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | | |||||||| |||||||| |
|
|
| T |
3402611 |
ctatgaagataatgtcattttgtcagcaaggaccagaagctatatgcattctatatgtaaatggagtcatatcaaaagtcgtcattagtcgacctcaatc |
3402710 |
T |
|
| Q |
120 |
gtctgaaaaattatccacatatgaggtgaagc |
151 |
Q |
| |
|
|||| || ||||| ||||||||||||||||| |
|
|
| T |
3402711 |
gtctcgaacattattcacatatgaggtgaagc |
3402742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 3374736 - 3374825
Alignment:
| Q |
262 |
tgtgtttctttaaataatgtaaattgaatttcagggtaaatatgaaattatatctttatctggctcattcatgccaaacgaaagtcgcgg |
351 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| |||||| ||| |||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
3374736 |
tgtgtttctttcaataatgcaaattgaatttcagggtagatatgacattcaatctttatctggctggttcatgccaatggaaagtcgcgg |
3374825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 3374542 - 3374640
Alignment:
| Q |
57 |
agctatatgcattctatctgcaaatggagtcatatcaagcgccaccattagtcagcctcaatcgtctgaaaaattatccacatatgaggtgaagcattt |
155 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||| |||||||||| || ||||||| | |||| || ||| | ||||||||||||||||||||| |
|
|
| T |
3374542 |
agctataagcatcctatctgcaaatggagtcgcatcaagagccaccattaatcggcctcaagcatctggaacattctacacatatgaggtgaagcattt |
3374640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 344
Target Start/End: Original strand, 3402843 - 3402933
Alignment:
| Q |
254 |
tgtttttatgtgtttctttaaataatgtaaattgaatttcagggtaaatatgaaattatatctttatctggctcattcatgccaaacgaaa |
344 |
Q |
| |
|
||||| | |||| |||||| ||||||| |||||||| |||| |||| |||||||||| | ||||||||||||||||||||||||| |||| |
|
|
| T |
3402843 |
tgtttctgtgtgattctttcaataatgcaaattgaagttcacggtagatatgaaattcgaactttatctggctcattcatgccaaaggaaa |
3402933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 42205929 - 42205997
Alignment:
| Q |
22 |
atgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcata |
90 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||| |||| |||||||||| || |||||||| |||||| |
|
|
| T |
42205929 |
atgaaggtaatttcattttctcagcaaggacctcgagctgtatgcattctttcagcaaatggtgtcata |
42205997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University