View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_low_18 (Length: 413)
Name: NF2701_low_18
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 6 - 412
Target Start/End: Complemental strand, 40797084 - 40796678
Alignment:
| Q |
6 |
agaagcaaaggcccttgtgcttctaatgacaattaaaaacatatctatgcgccaaggtttacaaccctctttgaatatcacattgtccactctatggttt |
105 |
Q |
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| T |
40797084 |
agaaacaaaggcccttgtgcttctaatgacaattaaaaacatatctatgcggcaaggtatacaaccctctttgaatatcacattgtccactctatggttt |
40796985 |
T |
|
| Q |
106 |
agacttagagtgaatcaacaatagcccaattcttattcaacacagtacaaagtaaaactacagtggtttaatcttcaattccatcgaaaagtagccagca |
205 |
Q |
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| T |
40796984 |
agacttagagtgaatcaacaatagcccaattcttattcaacacagtacaaagtaaaaccacagtggtttaatcttcaattccatcgaaaagtagccagca |
40796885 |
T |
|
| Q |
206 |
ttttagaacttcaagcaatttgcccaaccttgaaacctatagattaaactcaatataactaaaagattatcaacattatagttcctgtcgtggtccttct |
305 |
Q |
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| T |
40796884 |
ttttagaacttcaagcaatttgcccaaccttgaaacctatagattaaactcaatataattaaaagattatcaacattatagttcctgtcgtggtcctatt |
40796785 |
T |
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| Q |
306 |
tctatcacaaaagnnnnnnncgcaataaaagaatgaaatcacatgacatcagaagacaacacaacaaagctcgttaggtttagagaggatccatacaagc |
405 |
Q |
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| T |
40796784 |
gctatcacaaaagaaaacaacgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaagactggtaggcttagagaggatacatacatgc |
40796685 |
T |
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| Q |
406 |
ttctagg |
412 |
Q |
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|| |||| |
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| T |
40796684 |
ttatagg |
40796678 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 18307703 - 18307653
Alignment:
| Q |
222 |
aatttgcccaaccttgaaacctatagattaaactcaatataactaaaagat |
272 |
Q |
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|||||||||||| || |||| |||||||||| |||||||||| |||||||| |
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| T |
18307703 |
aatttgcccaacgtttaaacatatagattaagctcaatataattaaaagat |
18307653 |
T |
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