View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_low_19 (Length: 370)
Name: NF2701_low_19
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 48912577 - 48912930
Alignment:
| Q |
1 |
gtagaagccgtttcgtttagctttgctataaatgaaagaaaatgacataggtagccatcacagtacttggtttagacattttatcaaacacctaacatac |
100 |
Q |
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| T |
48912577 |
gtagaagccgtttcgtttagctttgctataaatgaaagaaaatgacataggtagccatcacagtacttggtttagacattttatcaaacacctaacatac |
48912676 |
T |
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| Q |
101 |
tattttaagcacatattcagtaaaaaatgaaatatatatgaatttaaaaattgagcaattagctatttatttatgctattgaacaagggatttgtataac |
200 |
Q |
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| T |
48912677 |
tattttaagcacatattcagtaaaaaatgaagtatatatgaatttaaaaattgagcaattagctatttatttatgctattgaacaagggatttgtataac |
48912776 |
T |
|
| Q |
201 |
aatgttgttctaaaagtaatgaacccagcaatacatacacgaatttatgtgctgaaatgtgaagtgatagcttctaattaccaaccacaagtaacattct |
300 |
Q |
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| T |
48912777 |
aatgttgttctaaaagtaatgaacccagcaatacatacacgaatttatgtgctgaaatgtgaagtgatagcttctaattaccaaccacaagtaacattct |
48912876 |
T |
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| Q |
301 |
atttctaatttgtgctccctcttctattcacaatacctgaataccagttaaaaa |
354 |
Q |
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| T |
48912877 |
atttctaatttgtgctccctcttctattcacaatacctgaataccagttaaaaa |
48912930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 48923988 - 48924053
Alignment:
| Q |
3 |
agaagccgtttcgtttagctttgctataaatgaaagaaaatgacataggtagccatcacagtactt |
68 |
Q |
| |
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|||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |
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| T |
48923988 |
agaagctgttttgtttagctttgctgcaaatgaaagaaaatgacataggcagccatcacagaactt |
48924053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 48924222 - 48924250
Alignment:
| Q |
72 |
ttagacattttatcaaacacctaacatac |
100 |
Q |
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| T |
48924222 |
ttagacattttatcaaacacctaacatac |
48924250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 55424990 - 55424955
Alignment:
| Q |
15 |
gtttagctttgctataaatgaaagaaaatgacatag |
50 |
Q |
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| T |
55424990 |
gtttagctttgctacaaatgaaagaaaatgacatag |
55424955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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