View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2701_low_20 (Length: 368)

Name: NF2701_low_20
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2701_low_20
NF2701_low_20
[»] chr3 (6 HSPs)
chr3 (23-357)||(27539177-27539508)
chr3 (138-261)||(36070963-36071087)
chr3 (46-183)||(15408906-15409043)
chr3 (23-183)||(2289721-2289881)
chr3 (314-357)||(36070918-36070961)
chr3 (23-183)||(20304172-20304332)
[»] chr6 (2 HSPs)
chr6 (23-357)||(7654638-7654972)
chr6 (46-183)||(25823074-25823211)
[»] chr4 (2 HSPs)
chr4 (23-357)||(16599024-16599362)
chr4 (317-357)||(17489151-17489191)
[»] chr7 (3 HSPs)
chr7 (23-183)||(26177252-26177412)
chr7 (49-180)||(19159948-19160079)
chr7 (49-180)||(20759347-20759478)
[»] chr5 (1 HSPs)
chr5 (23-183)||(37634900-37635060)
[»] scaffold0065 (1 HSPs)
scaffold0065 (23-145)||(42047-42169)
[»] chr2 (1 HSPs)
chr2 (50-184)||(12397502-12397636)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 357
Target Start/End: Complemental strand, 27539508 - 27539177
Alignment:
Q  23 ttatctcccgtaaaaaatacacatcttgatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatgc 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27539508 ttatctcccgtaaaaaatacacatcttgatataagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaagacttaaactttatgc 27539409  T
Q  123 agacttggttggcaaaggcagcagagaccgaaacatcatttatagaggttgtttccaagtcacatnnnnnnngtacttactgactttacagaaaacttca 222  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||       | |||||| ||||||||| |||||||||    
T  27539408 agacttggttggcaaaggcaacagagactgaaacatcatttatagaggttgtttccaagccacataaaaaaagaacttacagactttacataaaacttca 27539309  T
Q  223 ctcataacccgctctcgaccaccatttatatgaatataatttattggaatatccgagaaatcggcaacaatgattctcggcttgtgtttgttgtttcatg 322  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||    
T  27539308 ctcagaacccgctctcgaccaccagttaaatgaatataatttattggaatatctgaggaatcggcaacaatgattctcggcttctgtttgttgtttcatg 27539209  T
Q  323 acacagtgtggttttggagaaatttgttgtttcat 357  Q
    |||   |||||||||||||||||||||||||||||    
T  27539208 aca---tgtggttttggagaaatttgttgtttcat 27539177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 261
Target Start/End: Complemental strand, 36071087 - 36070963
Alignment:
Q  138 aggcagcagagaccgaaacatcatttatagaggttgtttccaagtcacatnnnnnnngta-cttactgactttacagaaaacttcactcataacccgctc 236  Q
    |||||||||||| ||||||| ||||||||||  ||||||||||||||||        | | || ||  |||||||||||||||||||||| |||||||||    
T  36071087 aggcagcagagatcgaaacaccatttatagaaattgtttccaagtcacagaagaaaaggaactcacatactttacagaaaacttcactcagaacccgctc 36070988  T
Q  237 tcgaccaccatttatatgaatataa 261  Q
    ||| |||||||||| ||||||||||    
T  36070987 tcgtccaccatttaaatgaatataa 36070963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 15408906 - 15409043
Alignment:
Q  46 tcttgatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatgcagacttggttggcaaaggcagca 145  Q
    |||||||||||||||||||||||| |||||   | ||||||| |||| |||| | || || |||||| | || ||||| |||||| |  |||||||||||    
T  15408906 tcttgatatcagtagcattgtggctccggagggttctaagatagatccggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggcagca 15409005  T
Q  146 gagaccgaaacatcatttatagaggttgtttccaagtc 183  Q
    |  |||||   | |||||||||||||||||||||||||    
T  15409006 gcaaccgaggtaccatttatagaggttgtttccaagtc 15409043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 2289881 - 2289721
Alignment:
Q  23 ttatctcccgtaaaaaatacacatcttgatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatgc 122  Q
    ||||||| ||||||||||| |  ||||||||||||||| |||||||| || |||  | ||||||| |||| |||| | || || |||||| | ||||||     
T  2289881 ttatctctcgtaaaaaataaaactcttgatatcagtagtattgtggctccagatggttctaagatagatccggtgctacaaaaagacttagattttatga 2289782  T
Q  123 agacttggttggcaaaggcagcagagaccgaaacatcatttatagaggttgtttccaagtc 183  Q
    | |||||| |  ||||||||||||  |||||   | |||||| ||||||||||||||||||    
T  2289781 acacttggctatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtc 2289721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 36070961 - 36070918
Alignment:
Q  314 tgtttcatgacacagtgtggttttggagaaatttgttgtttcat 357  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  36070961 tgtttcatgacacagtgtggttctggagaaatttgttgtttcat 36070918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 20304332 - 20304172
Alignment:
Q  23 ttatctcccgtaaaaaatacacatcttgatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatgc 122  Q
    ||||||||||||||||||| |  ||||||||||||||| |||||||| || ||   | ||||||| ||||||||| | || || |||||| | |||||||    
T  20304332 ttatctcccgtaaaaaataaaactcttgatatcagtagtattgtggctcccgagggttctaagatagatctggtgctacaaaaagacttagattttatgc 20304233  T
Q  123 agacttggttggcaaaggcagcagagaccgaaacatcatttatagaggttgtttccaagtc 183  Q
    | |||||| |  ||||| ||||||  |||||   | |||||| | | ||||||||||||||    
T  20304232 acacttggctatcaaagccagcagctaccgaggtaccatttacacaagttgtttccaagtc 20304172  T

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Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 357
Target Start/End: Original strand, 7654638 - 7654972
Alignment:
Q  23 ttatctcccgtaaaaaatacacatcttgatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatgc 122  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||  |||| |  ||||||||||| |||||||||    
T  7654638 ttatctcccgtaaaaaatacacat--tgatatcagtagcattgtggccccggataatgctaagatagattcggtgctcaagaaggacttacactttatgc 7654735  T
Q  123 agacttggttggcaaaggcagcagagaccgaaacatcatttatagaggttgtttccaagtcacatnnnnnnn--gtacttactgactttacagaaaactt 220  Q
    || |||||||||||||||||||| |||| |||||| |||||| |||||||||||||||||||||          | ||||||  ||||||||||||||||    
T  7654736 aggcttggttggcaaaggcagcatagactgaaacaccatttacagaggttgtttccaagtcacagaaaaaaaaagaacttacaaactttacagaaaactt 7654835  T
Q  221 cactcataacccgctctcgaccaccatttatatgaatataatttattggaatatccgagaaatcggcaacaatgattctcggcttgtgtttgttgtttca 320  Q
    |||||| |||||||||||||||| | |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  7654836 cactcagaacccgctctcgaccatcgtttaaatgaatataatttattggaatatccgaggaatcgacaacaatgattctcggcttgtgtttgttgtttca 7654935  T
Q  321 tgacacagtgtggttttggagaaatttgttgtttcat 357  Q
    |||||| ||||||||||||||||||||||||||||||    
T  7654936 tgacacggtgtggttttggagaaatttgttgtttcat 7654972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 25823074 - 25823211
Alignment:
Q  46 tcttgatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatgcagacttggttggcaaaggcagca 145  Q
    |||||||||||||||||||||||| |||||   | ||||||| |||| |||| | || || |||||| | || ||||| |||||| |  |||||||||||    
T  25823074 tcttgatatcagtagcattgtggctccggagggttctaagatagatccggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggcagca 25823173  T
Q  146 gagaccgaaacatcatttatagaggttgtttccaagtc 183  Q
    |  |||||   | |||||||||||||||||||||||||    
T  25823174 gcaaccgaggtaccatttatagaggttgtttccaagtc 25823211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 23 - 357
Target Start/End: Complemental strand, 16599362 - 16599024
Alignment:
Q  23 ttatctcccgtaaaaaa-tacacatcttgatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatg 121  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||| || | | |||||||||||| ||||||||    
T  16599362 ttatctcccgtaaaaaaatacacatattgatatcagtagcattgtggccccgaataatgctaagatagatccggcgctccagaaggacttacactttatg 16599263  T
Q  122 cagacttggttggcaaaggcagcagagaccgaaacatcatttatagaggttgtttccaagtcacatnnnnnnn--gtacttactgactttacagaaaa-c 218  Q
    ||| ||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| |          | |||||| ||||||||| |||| |    
T  16599262 caggcttggttggcaaaggcaacaaagaccgaaacatcatttacagaggttgtttccaagtcatagaaaaaaaaagaacttacagactttacaaaaaaac 16599163  T
Q  219 ttcactcataacccgctctcgaccaccatttatatgaatataatttattggaatatccgagaaatcggcaacaatgattctcggcttgtgtttgttgttt 318  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16599162 ttcactcagaacccgctctcgaccaccgtttaaatgaatataattttatggaatatccgaggaatcggcaacaatgattctcggcttgtgtttgttgttt 16599063  T
Q  319 catgacacagtgtggttttggagaaatttgttgtttcat 357  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  16599062 catgacacggtgtgattttggagaaatttgttgtttcat 16599024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 17489151 - 17489191
Alignment:
Q  317 ttcatgacacagtgtggttttggagaaatttgttgtttcat 357  Q
    |||||||||| |||||||| ||| |||||||||||||||||    
T  17489151 ttcatgacacggtgtggttctggtgaaatttgttgtttcat 17489191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 26177252 - 26177412
Alignment:
Q  23 ttatctcccgtaaaaaatacacatcttgatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatgc 122  Q
    ||||||||||||||||||| |  ||||||||||||||| |||||||| |||||  || ||||||| |||| ||||   || || |||||| | |||||||    
T  26177252 ttatctcccgtaaaaaataaaactcttgatatcagtagtattgtggctccggaggattctaagatagatccggtgcaacaaaaagacttagattttatgc 26177351  T
Q  123 agacttggttggcaaaggcagcagagaccgaaacatcatttatagaggttgtttccaagtc 183  Q
    | |||||| |  |||||||||||   |||||   | |||||| | ||||||||||||||||    
T  26177352 acacttggctatcaaaggcagcaacaaccgaggtaccatttacacaggttgtttccaagtc 26177412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 19159948 - 19160079
Alignment:
Q  49 tgatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatgcagacttggttggcaaaggcagcagag 148  Q
    ||||||||||||||||||||| |||||   | ||||||| |||| |||| | || || |||||| | || ||||| |||||| |  ||||||||||||      
T  19159948 tgatatcagtagcattgtggctccggagggttctaagatagatccggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggcagcagca 19160047  T
Q  149 accgaaacatcatttatagaggttgtttccaa 180  Q
    |||||   | ||||||||||||||||||||||    
T  19160048 accgaggtaccatttatagaggttgtttccaa 19160079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 20759347 - 20759478
Alignment:
Q  49 tgatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatgcagacttggttggcaaaggcagcagag 148  Q
    ||||||||||||||||||||| |||||   | ||||||| |||| |||| | || || |||||| | || ||||| |||||| |  ||||||||||||      
T  20759347 tgatatcagtagcattgtggctccggagggttctaagatagatccggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggcagcagca 20759446  T
Q  149 accgaaacatcatttatagaggttgtttccaa 180  Q
    |||||   | ||||||||||||||||||||||    
T  20759447 accgaggtaccatttatagaggttgtttccaa 20759478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 37635060 - 37634900
Alignment:
Q  23 ttatctcccgtaaaaaatacacatcttgatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatgc 122  Q
    ||||||||||||||||||| |  ||||||||||||||| |||||||| || ||   | ||||||| |||| |||| | || || |||||  | |||||||    
T  37635060 ttatctcccgtaaaaaataaaactcttgatatcagtagtattgtggctcccgagggttctaagatagatccggtgctacaaaaagacttggattttatgc 37634961  T
Q  123 agacttggttggcaaaggcagcagagaccgaaacatcatttatagaggttgtttccaagtc 183  Q
    | |||||| |  ||||||||||||  |||||   | |||||| | ||||||||||||||||    
T  37634960 acacttggctatcaaaggcagcagctaccgaggtaccatttacacaggttgtttccaagtc 37634900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 42047 - 42169
Alignment:
Q  23 ttatctcccgtaaaaaatacacatcttgatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatgc 122  Q
    ||||||||||||||||||| |  |||||| |||||||| |||||||| |||||   | ||||||| |||| |||| | || || |||||| | |||||||    
T  42047 ttatctcccgtaaaaaataaaactcttgacatcagtagtattgtggctccggagggttctaagatagatccggtgctacaaaaagacttagattttatgc 42146  T
Q  123 agacttggttggcaaaggcagca 145  Q
    | |||||| |  |||||||||||    
T  42147 acacttggctatcaaaggcagca 42169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 12397636 - 12397502
Alignment:
Q  50 gatatcagtagcattgtggccccggataatgctaagattgatctggtgttgcagaaggacttaaactttatgcagacttggttggcaaaggcagcagaga 149  Q
    ||||| ||||| ||||| || |||| | ||||| |||| |||| ||| || ||||||||| |||| ||||||||  |||||||  ||| ||||||||  |    
T  12397636 gatataagtagtattgtagctccggctgatgctcagatagatccggttttacagaaggacataaattttatgcaagcttggttatcaacggcagcagcta 12397537  T
Q  150 ccgaaacatcatttatagaggttgtttccaagtca 184  Q
    | || | | | |||||||| |||||||||||||||    
T  12397536 cggataaaccttttatagacgttgtttccaagtca 12397502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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