View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2701_low_22 (Length: 363)

Name: NF2701_low_22
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2701_low_22
NF2701_low_22
[»] chr3 (11 HSPs)
chr3 (12-348)||(9440884-9441222)
chr3 (26-348)||(9426248-9426564)
chr3 (19-344)||(9408045-9408370)
chr3 (18-344)||(9398465-9398799)
chr3 (18-296)||(9417282-9417562)
chr3 (154-241)||(41986518-41986605)
chr3 (144-211)||(9344709-9344776)
chr3 (152-219)||(9377968-9378035)
chr3 (313-344)||(9417249-9417280)
chr3 (152-220)||(9353782-9353850)
chr3 (175-211)||(9449162-9449198)
[»] scaffold0038 (1 HSPs)
scaffold0038 (144-205)||(20480-20541)
[»] chr6 (7 HSPs)
chr6 (144-205)||(28219982-28220043)
chr6 (130-220)||(7026607-7026697)
chr6 (144-201)||(28177219-28177276)
chr6 (130-202)||(7052964-7053036)
chr6 (130-220)||(7047660-7047753)
chr6 (144-220)||(9171677-9171753)
chr6 (144-211)||(28132963-28133030)
[»] chr5 (1 HSPs)
chr5 (128-193)||(18571945-18572010)
[»] chr1 (1 HSPs)
chr1 (141-202)||(4440689-4440750)
[»] scaffold0455 (1 HSPs)
scaffold0455 (144-211)||(10869-10936)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 9440884 - 9441222
Alignment:
Q  12 atactagaatagtaaattttcaatcgtgtagcattttttactagggttcgttactatnnnnnnnn--ggagaatcagcaacgcacaacaactatggcatc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  9440884 atactagaatagtaaattttcaatcgtgtagcattttttactagggttcgttactataaaaaaaaaaggagaatcagcaacgcacaacaactatggcatc 9440983  T
Q  110 gactgactggtgtgattgtgaactcccgactgagcttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9440984 gactgactggtgtgattgtgaactcccgactgagcttctaaatctgatatcgcaacgaatcgacgatgaactcgatctcattcgttttcgatctgtatgt 9441083  T
Q  210 tcaacgtggcggcgctcttccaattcaaatcatcatcccaattctgccctaaagcttccgcaactctcgtataatctctctgataccataaacaacatca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9441084 tcaacgtggcggcgctcttccaattcaaatcatcatcccaattctgccctaaagcttccgcaactctcgtataatctctctgataccataaacaacatca 9441183  T
Q  310 acacttctccgttttgctgcctcttcaaacgcactatct 348  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9441184 acacttctccgttttgctgcctcttcaaacgcactatct 9441222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 348
Target Start/End: Complemental strand, 9426564 - 9426248
Alignment:
Q  26 aattttcaatcgtgtagcattttttactagggttcgttactatnnnnnnnnggagaatcagcaacgcacaacaactatggcatcgactgactggtgtgat 125  Q
    |||| |||| ||| |||||| ||||||||||||| |||||| |        ||||||| || ||| |||| || | ||||| ||||||||||||||||||    
T  9426564 aattctcaaccgtctagcatgttttactagggtttgttactgttaaagaaaggagaattagtaacacacagcagccatggcgtcgactgactggtgtgat 9426465  T
Q  126 tgtgaactcccgactgagcttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgttcaacgtggcggcgct 225  Q
          ||||| ||||||||||| ||| |||||| ||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9426464 ------ctcccaactgagcttctgaatttgatattgcaacgaaacgacgatgaactcgatctcattcgtttttgatctgtatgttcaacgtggcggcgct 9426371  T
Q  226 cttccaattcaaatcatcatcccaattctgccctaaagcttccgcaactctcgtataatctctctgataccataaacaacatcaacacttctccgttttg 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  9426370 cttccaattcaaatcatcatcccaattctgccctaaagcttccgcaactctcgtgtaatctctctggtaccataaacaacatcaacacttctccgttttg 9426271  T
Q  326 ctgcctcttcaaacgcactatct 348  Q
    |||||||||||||||||||||||    
T  9426270 ctgcctcttcaaacgcactatct 9426248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 9408370 - 9408045
Alignment:
Q  19 aatagtaaattttcaatcgtgtagcattttttactagggttcgttactatnnnnnnnnggagaatcagcaacgcacaacaactatggcatcgactgactg 118  Q
    |||||||||||||||||||| |||||| || |||||||||| |||||| |        ||||||| || ||| |||| || | ||||| |||||||||||    
T  9408370 aatagtaaattttcaatcgtctagcatgttctactagggtttgttacttttaaagaaaggagaattagtaacacacagcagccatggcgtcgactgactg 9408271  T
Q  119 gtgtgattgtgaactcccgactgagcttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgttcaacgtgg 218  Q
    |||||||      ||||| ||||| ||||| ||| ||||||||||| |||| |||||||||||||||||||||| ||||||||| || ||||||||||||    
T  9408270 gtgtgat------ctcccaactgaccttctgaatttgatatcgcaaagaatcgacgatgaactcgatctcattcattttcgatcggtttgttcaacgtgg 9408177  T
Q  219 cggcgctcttccaattcaaatcatcatcccaattctgccctaaagcttcc------gcaactctcgtataatctctctgataccataaacaacatcaaca 312  Q
    ||||||| ||||| ||||||||| |||||||||||| |||||||| ||||       | |||||| |||||||||||||||||||| ||||||| |||||    
T  9408176 cggcgctgttccatttcaaatcaccatcccaattctaccctaaaggttccacgcctccgactctcatataatctctctgataccatcaacaacaccaaca 9408077  T
Q  313 cttctccgttttgctgcctcttcaaacgcact 344  Q
    |||||| |||||||||||||||||||||||||    
T  9408076 cttctcggttttgctgcctcttcaaacgcact 9408045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 9398799 - 9398465
Alignment:
Q  18 gaatagtaaattttcaatcgtgtagcattttttactagggttcgttactatnnnnnnnnggagaatcagcaacgcacaacaa--------ctatggcatc 109  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||        |||||||||| ||| |||| ||         | ||||||||    
T  9398799 gaatagtaaattttcaatcgtgtagcatgtttcactagggttcgttactataaaagaaaggagaatcagtaacacacagcactacagcagccatggcatc 9398700  T
Q  110 gactgactggtgtgattgtgaactcccgactgagcttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgt 209  Q
    |||||||||||||||      ||| || ||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||| ||||||||| || |||    
T  9398699 gactgactggtgtga------actaccaactgagcttctgaatctgatatcccaacgaattgacgatgaacttgatctcattcattttcgatcggtttgt 9398606  T
Q  210 tcaacgtggcggcgctcttccaattcaaatcatcatcccaattctgccctaaagcttccgc------aactctcgtataatctctctgataccataaaca 303  Q
    |||| |||||||||||| |||| |||||||||  ||||||||||| |||| ||| |||  |      ||||||| |||| ||||||| ||||||| ||||    
T  9398605 tcaaagtggcggcgctcatccatttcaaatcacaatcccaattctaccctcaaggttcttctcctcgaactctcatatactctctctaataccatcaaca 9398506  T
Q  304 acatcaacacttctccgttttgctgcctcttcaaacgcact 344  Q
    ||| |||||||||||||||||||||||||||||||| ||||    
T  9398505 acaccaacacttctccgttttgctgcctcttcaaacacact 9398465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 9417562 - 9417282
Alignment:
Q  18 gaatagtaaattttcaatcgtgtagcattttttactagggttcgttactatnnnnnnnnggagaatcagcaacgcacaacaa--------ctatggcatc 109  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||| |        |||||||||| ||| |||| ||         | ||||||||    
T  9417562 gaatagtaaattttcaatcgtgtagcatatttcactagggttcgttactgtaaaagaaaggagaatcagtaacacacagcactacagcagccatggcatc 9417463  T
Q  110 gactgactggtgtgattgtgaactcccgactgagcttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgt 209  Q
    |||||||||||||||      ||| || ||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||| ||||||||| || |||    
T  9417462 gactgactggtgtga------actaccaactgagcttctgaatctgatatcacaacgaattgacgatgaacttgatctcattcattttcgatcggtttgt 9417369  T
Q  210 tcaacgtggcggcgctcttccaattcaaatcatcatcccaattctgccctaaagcttccgcaactctcgtataatctctctgatacc 296  Q
    |||| ||||||||||||||||| |||||||||  ||||||||||| |||| ||| |||| |||||||| ||||||||||||||||||    
T  9417368 tcaaagtggcggcgctcttccatttcaaatcacaatcccaattctaccctcaaggttccacaactctcatataatctctctgatacc 9417282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 41986605 - 41986518
Alignment:
Q  154 tgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgttcaacgtggcggcgctcttccaattcaaatca 241  Q
    ||||||| |||||| | ||| |||| || |||||||||||||| ||||| || ||||| ||||||||| |||||||||  ||||||||    
T  41986605 tgatatcacaacgattcgacaatgatcttgatctcattcgtttccgatcagtttgttcgacgtggcggtgctcttccatctcaaatca 41986518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 9344776 - 9344709
Alignment:
Q  144 cttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgttc 211  Q
    ||||| ||||| |||||||||||  | ||| ||||||| ||||||||||| ||||||||||| |||||    
T  9344776 cttctcaatcttatatcgcaacgcctcgacaatgaacttgatctcattcgctttcgatctgtttgttc 9344709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 9378035 - 9377968
Alignment:
Q  152 tctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgttcaacgtggc 219  Q
    ||||||||| |||||  | |||| |||||| |||||||||||||||||||| || |||||||| ||||    
T  9378035 tctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggc 9377968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 344
Target Start/End: Complemental strand, 9417280 - 9417249
Alignment:
Q  313 cttctccgttttgctgcctcttcaaacgcact 344  Q
    ||||||||||||||||||||||||||||||||    
T  9417280 cttctccgttttgctgcctcttcaaacgcact 9417249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 9353850 - 9353782
Alignment:
Q  152 tctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgttcaacgtggcg 220  Q
    ||||||||| |||||  | ||||  ||||| |||||||||||||||||||| || |||||||| |||||    
T  9353850 tctgatatcacaacgccttgacgtagaacttgatctcattcgttttcgatcagtttgttcaacttggcg 9353782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 9449198 - 9449162
Alignment:
Q  175 atgaactcgatctcattcgttttcgatctgtatgttc 211  Q
    |||||||||||||||||||||||||||| || |||||    
T  9449198 atgaactcgatctcattcgttttcgatcagtttgttc 9449162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 20541 - 20480
Alignment:
Q  144 cttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgt 205  Q
    ||||| ||||||||||| |||||| | ||| |||||||||||||||||||||||||||||||    
T  20541 cttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgt 20480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 28220043 - 28219982
Alignment:
Q  144 cttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgt 205  Q
    ||||| ||||||||||| |||||| | ||| |||||||||||||||||||||||||||||||    
T  28220043 cttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgt 28219982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 7026697 - 7026607
Alignment:
Q  130 aactcccgactgagcttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgttcaacgtggcg 220  Q
    ||||||| || |||||||| ||||||||||||||||||||  |||| ||| ||||||||||||  || ||||| || |||||||| |||||    
T  7026697 aactcccaacggagcttctcaatctgatatcgcaacgaatctacgaagaagtcgatctcattcacttccgatcagtttgttcaacctggcg 7026607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 28177276 - 28177219
Alignment:
Q  144 cttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgat 201  Q
    ||||| ||||||||||| |||||| | ||| |||||||||||||||||||||||||||    
T  28177276 cttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgat 28177219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 7053036 - 7052964
Alignment:
Q  130 aactcccgactgagcttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatc 202  Q
    ||||||| || |||||||| ||||||||||| |||||||| ||||||||| ||||| ||||||| || |||||    
T  7053036 aactcccaacggagcttctcaatctgatatcacaacgaattgacgatgaaatcgatttcattcgcttccgatc 7052964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 7047753 - 7047660
Alignment:
Q  130 aactcccgactgagcttctaaatctgatatcgcaacgaatagacgatga---actcgatctcattcgttttcgatctgtatgttcaacgtggcg 220  Q
    ||||||| || || ||||| ||||||||||| |||||||| ||||||||   ||||||||||||||| || ||||| || |||||||| |||||    
T  7047753 aactcccaacagaccttctcaatctgatatcacaacgaatcgacgatgatgaactcgatctcattcgcttccgatcagtttgttcaacatggcg 7047660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 9171753 - 9171677
Alignment:
Q  144 cttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgttcaacgtggcg 220  Q
    ||||| ||||||||||| ||||||||  | |||||| ||||||||||||| |||| ||| || |||||||| |||||    
T  9171753 cttctcaatctgatatcacaacgaatctatgatgaagtcgatctcattcgctttcaatcagtttgttcaacatggcg 9171677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 28132963 - 28133030
Alignment:
Q  144 cttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgttc 211  Q
    ||||| ||||||||||| |||||| | | | ||||||| ||||||||||||| ||||||||| |||||    
T  28132963 cttctcaatctgatatctcaacgactcgtcaatgaacttgatctcattcgttatcgatctgtttgttc 28133030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 18572010 - 18571945
Alignment:
Q  128 tgaactcccgactgagcttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcg 193  Q
    ||||||||| ||||||||||| |||||||||||| |||| || || | ||||||||||||||||||    
T  18572010 tgaactcccaactgagcttctgaatctgatatcgtaacgcattgatgttgaactcgatctcattcg 18571945  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 4440750 - 4440689
Alignment:
Q  141 gagcttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatc 202  Q
    ||||||||| |||||||||| |||||| | |||| ||||||||||||||||||||| |||||    
T  4440750 gagcttctacatctgatatcccaacgactcgacgttgaactcgatctcattcgtttccgatc 4440689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 10869 - 10936
Alignment:
Q  144 cttctaaatctgatatcgcaacgaatagacgatgaactcgatctcattcgttttcgatctgtatgttc 211  Q
    ||||| ||||||||||| |||||| | | | ||||||| ||||||||||||| ||||||||| |||||    
T  10869 cttctcaatctgatatctcaacgactcgtcaatgaacttgatctcattcgttatcgatctgtttgttc 10936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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