View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_low_23 (Length: 356)
Name: NF2701_low_23
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 12790295 - 12790623
Alignment:
| Q |
19 |
caatacctaacaattggttcagatgtcagaccaagagatcccattacaaaaaatcaagattttaggagaaaattgtacggttctgtggccttttcttgta |
118 |
Q |
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| T |
12790295 |
caatacctaacaattggttcagatgtcagaccaagagatcccattacaaaaaatgaagattttaggagaaaattgtatggttctgtggccttttcttgta |
12790394 |
T |
|
| Q |
119 |
taatagacagaagactaatcctttacaaaaatatagcagagattacaggaaattttcctcaagtctaacctagtattaaatttttctagcagtagtacgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12790395 |
taatagacagaagactaatcctttacaaaaatatagcagagattacaggaaattttcctcaagtctaacctagtattaaatttttctagcagtagtacgg |
12790494 |
T |
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| Q |
219 |
taaaatcttctgatgtttactatgataacatttgaaagcggtaacttggaatgctttcttaaagtgtccatgtgcacatattagnnnnnnnaagtgtgtt |
318 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12790495 |
taaaattttctgatgtttactatgataacatttgaaagcggcaacttggaatgctttcttaaagtgtccatgtgcacatattagcccccccaagtgtgtt |
12790594 |
T |
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| Q |
319 |
ctcttcttaacaaatccgtcccttcatct |
347 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
12790595 |
ttcttcttaacaaatccgtcccttcatct |
12790623 |
T |
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