View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_low_24 (Length: 355)
Name: NF2701_low_24
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 21 - 340
Target Start/End: Original strand, 39300308 - 39300623
Alignment:
| Q |
21 |
tgaaaatgaaaagaacttgccttattaatcagatgcatgcgttcatgtggacgttcgtcctcaaagaattgatagacaagcttagttgttgtcttctttg |
120 |
Q |
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| T |
39300308 |
tgaaaatgaaaagaacttgccttattaatcagatgcatgcgttcatgtggacgttcgtcctcaaagaattgatagacaagcttagttgttgtcttctttg |
39300407 |
T |
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| Q |
121 |
aaggctccaaaccacttttttcctcactagatttcctgctagagattcattacaacaaaaaccacaaatatatcttaaacattggagtgatggcaaaatg |
220 |
Q |
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| T |
39300408 |
aaggctccaaaccacttttttcctcactagatttcctgctagagattcattacaacaaaaaccac----atatcttaaacattggagtggtggcaaaatg |
39300503 |
T |
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| Q |
221 |
atgtcttgaattcaaagaaaataaagaactattaaaaatggaccaatgaaaaaccaacttacttcaatccttgatcatcctcaacatacaattgaagagc |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300504 |
atgtcttgaattcaaagaaaataaagaactattaaaaatggacaaatgaaaaaccaacttacttcaatccttgatcatcctcaacatacaattgaagagc |
39300603 |
T |
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| Q |
321 |
agaaagagatggagcaaagt |
340 |
Q |
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|||||||||||||||||||| |
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| T |
39300604 |
agaaagagatggagcaaagt |
39300623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 39308958 - 39309040
Alignment:
| Q |
258 |
atggaccaatgaaaaaccaacttacttcaatccttgatcatcctcaacatacaattgaagagcagaaagagatggagcaaagt |
340 |
Q |
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| T |
39308958 |
atggaccaaggataaaccaacttacttcaatccttgatcatcctcaacatacaattgaagagcagaaagagatggaacaaagt |
39309040 |
T |
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