View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_low_26 (Length: 335)
Name: NF2701_low_26
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 44101399 - 44101719
Alignment:
| Q |
1 |
acgttattgatttgtatttggttttcataataagtatatatcaaatcttatattaagttggaatttaatgataatgtttcaaaggaattaatcatgaaaa |
100 |
Q |
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| T |
44101399 |
acgttattgatttgtatttggttttcataataagtatatatcaaatcttatattaagttggaatttaatgataatgtttcaaaggaattaatcgtgaaaa |
44101498 |
T |
|
| Q |
101 |
actattcctaaggtttttaatgacatgactgtgtccatcaagttagtctctgaataatgacaggatcaggaacttaatttaatcatttatgaattaatat |
200 |
Q |
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| T |
44101499 |
actattcctaaggtttttaatgacatgactgtgtccatcaagttagtctctgaataatgacaggatcaggaacttaatttaatcatttatgaattaatat |
44101598 |
T |
|
| Q |
201 |
gactgatgcattttattttctcatagactaatttgattcgattgtttacatgatttgatttgagttctttattttaagattgtgagtaacgttgtggttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
44101599 |
gactgatgcattttattttctcatagactaatttgattcgattgtttacatgatttgatttgagttctttattttaagattgcgagtaatgttgtggttg |
44101698 |
T |
|
| Q |
301 |
taaatgctaggccaacaagtg |
321 |
Q |
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||||||||||||||||||||| |
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| T |
44101699 |
taaatgctaggccaacaagtg |
44101719 |
T |
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