View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2701_low_27 (Length: 330)

Name: NF2701_low_27
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2701_low_27
NF2701_low_27
[»] chr4 (1 HSPs)
chr4 (19-315)||(40125982-40126278)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 40126278 - 40125982
Alignment:
Q  19 atggggctactatcgaaggtgacacgagtatttcatgagaatggattatccataacaagaattgagtttggagtagagggtgaagcagcaataggatcat 118  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40126278 atggggctactatcgaaggtgacacaagtaattcatgagaatggattatccataacaagaattgagtttggagtagagggtgaagcagcaataggatcac 40126179  T
Q  119 tctatgttacaggttgttcaggtcaagatgtgaatgaaaatatagtagagttgataaaaagagaaattggtgggtcaattgttttggctcaaagttctcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40126178 tctatgttacaggttgttcaggtcaagatgtgaatgaaaatatagtagagttgataaaaagagaaattggtgggtcaattgttttggctcaaagttctcc 40126079  T
Q  219 atacagggactctcaatcctcatcatccagtaacaatagtagagatgttataccaacattttcttttggaagcatgattcggtctcacctcgagcgt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40126078 atacagggactctcaatcctcatcatccagtaacaatagtagagatgttataccaacattttcttttggaggcatgattcggtctcacctcgagcgt 40125982  T

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