View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_low_30 (Length: 298)
Name: NF2701_low_30
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 39272347 - 39272547
Alignment:
| Q |
27 |
caacaatcaattatagactcaaagaaaggaataatcaaataccatgaaaactaaaaattattcaaaacacgagagtaaaatattgatgcattatttaggt |
126 |
Q |
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| T |
39272347 |
caacaatcaattataaactcaaagaaaggaataatcaaatacaatcaaaactaaaaattattcaaaacaagagagtaaaatattgatgcattatttaggt |
39272446 |
T |
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| Q |
127 |
gaaatacattctctgagaggaatactactacatatgtttgaaattactaattactgtatattttgcatctgtataaataataacctccatttgaaggccc |
226 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39272447 |
gaaatacattctctgagaggaatactactaaataagtttgaaatta--aattactgtatattttgcatctgtataaataataacctccatttgaaggccc |
39272544 |
T |
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| Q |
227 |
tta |
229 |
Q |
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||| |
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| T |
39272545 |
tta |
39272547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 39272575 - 39272637
Alignment:
| Q |
228 |
tagaggatctcattcaggcaagccccaaagacttgagtctagagaattcaatcctcctatgct |
290 |
Q |
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| T |
39272575 |
tagaggatctcattcaggcaagccccaaagacttgagtctagagaattcaatcctcctatgct |
39272637 |
T |
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