View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2701_low_31 (Length: 291)
Name: NF2701_low_31
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_31 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 36466424 - 36466167
Alignment:
| Q |
16 |
cagagaagttgaagacattatggaaataaggggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttacttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36466424 |
cagagaagttgaagacattatggaaataaggggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttacttt |
36466325 |
T |
|
| Q |
116 |
ataaacattcatagcttgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaatttagcccctaaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36466324 |
ataaacattcatagcttgttggatttgatgaaagtgagtggattgatatgttggcaatggcatgcaaatttgtaacaaccattcaatttagcccctaaat |
36466225 |
T |
|
| Q |
216 |
attttgaaatagcacgatagatttcagatcaagaaactaggattcaatttgtaaggta |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36466224 |
attttgaaatagcacgatagatttcagatcaagaaactaggattcaatttgtaaggta |
36466167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 132 - 269
Target Start/End: Original strand, 36471206 - 36471343
Alignment:
| Q |
132 |
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaatttagcccctaaatattttgaaatagcacg |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36471206 |
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccgttcaatttagcccctaaatattttgaaatagcacg |
36471305 |
T |
|
| Q |
232 |
atagatttcagatcaagaaactaggattcaatttgtaa |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36471306 |
atagatttcagatcaagaaactaggattcaatttgtaa |
36471343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 41147926 - 41147873
Alignment:
| Q |
182 |
aatttgtaacaaccattcaatttagcccctaaatattttgaaatagcacgatag |
235 |
Q |
| |
|
|||||||||| | |||||||||||| |||| ||| |||||||||||||| |||| |
|
|
| T |
41147926 |
aatttgtaaccatcattcaatttagtccctgaattttttgaaatagcacaatag |
41147873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 21191109 - 21191376
Alignment:
| Q |
16 |
cagagaagttgaagacattatggaaataaggggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttacttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21191109 |
cagagaagttgaagacattatggaaataaggggaccaaacatacatagaagggatcagaaataaactctacaacattattgaagagctcaagtttacttt |
21191208 |
T |
|
| Q |
116 |
ataaacattcatagcttgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaatttagcccctaaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21191209 |
ataaacattcatagcttgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaatttagcccctaaat |
21191308 |
T |
|
| Q |
216 |
attttgaaatagcac--------------gatagatttcagatcaagaaactaggattcaatttgtaa |
269 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21191309 |
attttgaaatagcacgataggattctcatgatagatttcagatcaagaaactaggattcaatttgtaa |
21191376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 132 - 269
Target Start/End: Complemental strand, 29389630 - 29389479
Alignment:
| Q |
132 |
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaatttagcccctaaatattttgaaatag---- |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29389630 |
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcgaatttgtaacaaccattcaatttagcccctaaatattttgaaatagcact |
29389531 |
T |
|
| Q |
228 |
----------cacgatagatttcagatcaagaaactaggattcaatttgtaa |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29389530 |
ataggattctcacgatagatttcagatcaagaaactaggattcaatttgtaa |
29389479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 29390503 - 29390537
Alignment:
| Q |
235 |
gatttcagatcaagaaactaggattcaatttgtaa |
269 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29390503 |
gatttcagatcaaaaaactaggattcaatttgtaa |
29390537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 8697363 - 8697461
Alignment:
| Q |
30 |
acattatggaaataagg-ggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcat |
127 |
Q |
| |
|
|||||| ||| |||||| |||||| ||||| | |||||||||| | |||||||||||||||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
8697363 |
acattaaggagataaggaggaccatacatatgtagaagggatcaaagataaactctacaacataattgaagagcttaagtttagtttatacacattcat |
8697461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 18388615 - 18388688
Alignment:
| Q |
54 |
acatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcat |
127 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||||||| ||| ||||||| ||||||| ||||||||| ||||| |
|
|
| T |
18388615 |
acatacatggaagagatcagagataaactctacaacataattaaagagcttaagtttattttataaacgttcat |
18388688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 18593 - 18528
Alignment:
| Q |
63 |
gaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcata |
128 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
18593 |
gaagggatcaaagataaactctacaacataattgaagagcttaagtttagtttatacacattcata |
18528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 20125 - 20189
Alignment:
| Q |
63 |
gaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcat |
127 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
20125 |
gaagggatcaaagataaactctacaacataattgaagagcttaagtttagtttatacacattcat |
20189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University