View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_low_32 (Length: 291)
Name: NF2701_low_32
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_32 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 39802340 - 39802609
Alignment:
| Q |
20 |
gttgtatactgttctctaggagtgaattattcatagacactagcttgaactgtttaaaaaattattgatagactccatctttcaaataattcatgtatta |
119 |
Q |
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| T |
39802340 |
gttgtatactgttctctaggagtgaattattcatagacactagcttgaactgtttaaaaaattattgatagactccatctttcaaataattcatgtatta |
39802439 |
T |
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| Q |
120 |
aattaaatacaataaaaccacaatcattagtcaattctaatcgaaatctgatcaaataatttatctctattattagtttggtttacaaaataaattaagt |
219 |
Q |
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| T |
39802440 |
aattaaatacaataaaaccacaatcattagtcaattctaatcgaaatctgatcaaataatttatctctattattagtttggtttacaaaataaattaagt |
39802539 |
T |
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| Q |
220 |
aaatannnnnnnnnnngaaatatctaaaaagctattatagtcagagcatccaatccaaatcactaaaataac |
291 |
Q |
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| T |
39802540 |
aaata--tttttttttgaaatatctaaaaagctattatagtcagagcatccaatccaaatcactaaaataac |
39802609 |
T |
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