View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_low_37 (Length: 272)
Name: NF2701_low_37
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 5840607 - 5840779
Alignment:
| Q |
19 |
tttgttttctacttgctgctgcatttttgttttt-cttctgcccgtgttgccttctttgcgctaggttgttgtttaagcggtttggccttgattggcttt |
117 |
Q |
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| T |
5840607 |
tttgttttctacttgctgctgcatttttgttttttctgctgcccgtgttgccttctttgcgctaggttgttgtttaagcggtttggccttgattggcttt |
5840706 |
T |
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| Q |
118 |
tttgtattgttccccagctcttttactgcacttctgctgc-ggggggcttttgataaataaatattgcttttt |
189 |
Q |
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| T |
5840707 |
tttgtattgttccccagctcttttactgcacttctgctgcgggggggcttttgataaataaatattgtttttt |
5840779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 5846813 - 5846927
Alignment:
| Q |
81 |
aggttgttgtttaagcggtttggccttgattggcttttttgtattgttccccagct------cttttactgcacttctgctgcggggggcttttgataaa |
174 |
Q |
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| T |
5846813 |
aggttgttgtttaagcggtttggccttgattcgcttttttgtattgttccccatctcttttacttttactgcacttctgctgcgggggggctttgataaa |
5846912 |
T |
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| Q |
175 |
taaatattgcttttt |
189 |
Q |
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| T |
5846913 |
taaatattgcttttt |
5846927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 5846944 - 5846991
Alignment:
| Q |
211 |
tgtctgtctttgtttaaagtttttcaattaagtcattgtctctatgtt |
258 |
Q |
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| T |
5846944 |
tgtctgtctttgtttaaagtttttcaattaggtcattgtctctatgtt |
5846991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 5840798 - 5840837
Alignment:
| Q |
211 |
tgtctgtctttgtttaaagtttttcaattaagtcattgtc |
250 |
Q |
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| T |
5840798 |
tgtatgtctttgtttaaagtttttcaattaggtcattgtc |
5840837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 6350016 - 6349858
Alignment:
| Q |
22 |
gttttctacttgctgctgcatttttgtttttcttctgcccgtgt--tgccttctttgcgctaggttgttgtttaagcggtttggccttgattggcttttt |
119 |
Q |
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|||||||| |||||||||| ||||||||||||| ||||| |||| |||||||| ||||| ||||||||||||||| |||||||||||||| ||| ||| |
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| T |
6350016 |
gttttctatttgctgctgcttttttgtttttctgctgcctgtgtgttgccttctatgcgccaggttgttgtttaaggggtttggccttgataggc-tttg |
6349918 |
T |
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| Q |
120 |
tgtattgttccccagctcttttactgcacttctgctgcggggggcttttgataaataaat |
179 |
Q |
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| T |
6349917 |
tgtatggttccataactctttttatgcacttctgctgcaggggacttttgattaataaat |
6349858 |
T |
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