View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2701_low_4 (Length: 695)

Name: NF2701_low_4
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2701_low_4
NF2701_low_4
[»] chr2 (1 HSPs)
chr2 (24-678)||(40646619-40647273)


Alignment Details
Target: chr2 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 24 - 678
Target Start/End: Original strand, 40646619 - 40647273
Alignment:
Q  24 taaacccacacgtgcaagtaccacaatcacacgtgcaaccaccaaaacaaaaacatcatcattttccgacaacccttcaacctcatacgccggttcaacc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40646619 taaacccacacgtgcaagtaccacaatcacacgtgcaaccaccaaaacaaaaacatcatcattttccgacaacccttcaacctcatacgccggttcaacc 40646718  T
Q  124 ggattccatctctcaaccgatacatcaatctcaagcagaacatccttaacctctcttcgcaactcactcccagaaaacccaaacatctacgacttctccg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40646719 ggattccatctctcaaccgatacatcaatctcaagcagaacatccttaacctctcttcgcaactcactcccagaaaacccaaacatctacgacttctccg 40646818  T
Q  224 aaatctgttccgccacaaacaacttcctctccaaacgctactcttcctcaacaccatgttggcgttgcaccttgcgtaactctgacgtcatcatcttcca 323  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  40646819 aaatctgttccgccacaaataacttcctctccaaacgctactcttcctcaacaccatgctggcgttgcaccttacgtaactctgacgtcatcatcttcca 40646918  T
Q  324 acgcaaattccgtcgcaaactccaaacccaacagctgcaagagcttctttccaccatctgtcgcagccaccacgtcagcatcgtgaaactcctcggcgtt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40646919 acgcaaattccgtcgcaaactccaaacccaacagctgcaagagcttctttccaccatctgtcgcagccaccacgtcagcatcgtgaaactcctcggcgtt 40647018  T
Q  424 tcgatctccggtgaacatatctaccttgtttacgaattcgttaacggtgcgaatctttcagattgtttacgaaatgcaagaaacgttcattacactgttc 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40647019 tcgatctccggtgaacatatctaccttgtttacgaattcgttaacggtgcgaatctttcagattgtttacgaaatgcaagaaacgttcattacactgttc 40647118  T
Q  524 tttcgacgtggatttcgagaatgcaagttgcgacggatcttgctcatggaattgattatattcataataaaactggtttgaattttaattttgttcataa 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40647119 tttcgacgtggatttcgagaatgcaagttgcgacggatcttgctcatggaattgattatattcataataaaactggtttgaattttaattttgttcataa 40647218  T
Q  624 tcatatcaagagtagtgcgattgttgttactgaaccagaattcaatgctagggtt 678  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40647219 tcatatcaagagtagtgcgattgttgttactgaaccggaattcaatgctagggtt 40647273  T

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