View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_low_42 (Length: 230)
Name: NF2701_low_42
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_42 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 48912339 - 48912568
Alignment:
| Q |
1 |
ctaaatgtgctatcaaattaacttgttcttgtaactgggagactatatccatcgtcgaagaaactttatggcaataatttcaacttaacaaagttcaact |
100 |
Q |
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| T |
48912339 |
ctaaatgtgctatcaaattaacttgttcttgtaactgggagactatatccatcgtcgaagaaactttatggcgataatttcaaattaacaaagttcaact |
48912438 |
T |
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| Q |
101 |
gcagaataagaaacataaaggttatcgatacgtttatacatatgcaattacggacatatgtagtcaaaatccagttacatgcttatgacaaatctaaatt |
200 |
Q |
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| T |
48912439 |
gcagaataagaaacataaaggttatcgatacgtttatacatatgcaattacggacatatgtagtcaaaatccagttacatgcttatgacaaatctaaatt |
48912538 |
T |
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| Q |
201 |
ctaatgaaaacaaagattctgacaaatgaa |
230 |
Q |
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| T |
48912539 |
ctaatgaaaacaaagattctgacaaatgaa |
48912568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 48923756 - 48923889
Alignment:
| Q |
14 |
caaattaacttgttcttgtaactgggagactatatccatcgtcgaagaaactttatggcaataatttcaacttaacaaa-gttcaactgcagaataagaa |
112 |
Q |
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| T |
48923756 |
caaattaacttgttcttgtaactgggggacaatgtcaattgcaggagtaactttatggagaaaatttcgacttaaaaaatgttcaactgcagaataagaa |
48923855 |
T |
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| Q |
113 |
acataaaggttatcgatacgtttatacatatgca |
146 |
Q |
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| T |
48923856 |
acataaaggttatctacatgtttatacatatgca |
48923889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 13599857 - 13599817
Alignment:
| Q |
12 |
atcaaattaacttgttcttgtaactgggagactatatccat |
52 |
Q |
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| T |
13599857 |
atcaaattaacttgttcttgtagctgagagattatatccat |
13599817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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