View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2701_low_5 (Length: 681)

Name: NF2701_low_5
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2701_low_5
NF2701_low_5
[»] chr4 (2 HSPs)
chr4 (242-681)||(40613911-40614349)
chr4 (166-232)||(17558824-17558890)
[»] chr1 (3 HSPs)
chr1 (166-231)||(38236310-38236375)
chr1 (166-233)||(6923503-6923570)
chr1 (183-231)||(51387129-51387177)
[»] chr8 (1 HSPs)
chr8 (179-234)||(16367864-16367919)
[»] chr5 (3 HSPs)
chr5 (179-234)||(16349712-16349767)
chr5 (166-231)||(16222680-16222745)
chr5 (179-231)||(4082576-4082628)
[»] chr7 (1 HSPs)
chr7 (194-231)||(7853691-7853728)


Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 242 - 681
Target Start/End: Complemental strand, 40614349 - 40613911
Alignment:
Q  242 tataataaagctcaactgtacgaggttagcttagtcttgtcttaaacaaagtaaagaagacaaggaccaaaccaaatcataagaaaatttaggttgtaca 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  40614349 tataataaagctcaactgtacgaggttagcttagtcttgtcttaaacaaagtaaagaagacaaggaccaaaccaaatcatcagaaaatttaggt-gtaca 40614251  T
Q  342 tagcaaccatttctctgtttttcacaacactaacaaaatttctgtccnnnnnnncatctccactttgtttctttctcccaaccctgttccattaatttct 441  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||    
T  40614250 tagcaaccatttctctgtttttcacaacactcacaaaatttctgtcctttttttcatttccactttgtttctttctcccaaccctgttccattaatttct 40614151  T
Q  442 acaactattagtacatagccactccaaactcttcttccttcttccatcatatcaatattcatggccaccacaccttatccacaaccaccttcacgtgcct 541  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40614150 acaactatttgtacatagccactccaaactcttcttccttcttccaccatatcaatattcatggccaccacaccttatccacaaccaccttcacgtgcct 40614051  T
Q  542 ttctagacacaatacaagaaatcacacaaatctattcttcacttccacctagaccttctatagaagaaatagaagctgcaacgtcaacgcttgacactct 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40614050 ttctagacacaatacaagaaatcacacaaatctattcttcacttccacctagaccttctatagaagaaatagaagctgcaacgtcaacgcttgacactct 40613951  T
Q  642 taacaacgtggaacaaacgaaactccaagaaattgcagta 681  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40613950 taacaacgtggaacaaacgaaactccaagaaattgcagta 40613911  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 17558890 - 17558824
Alignment:
Q  166 aatgaatttcagttaatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagtt 232  Q
    |||||||||||  | || ||||| || ||||||||||||||||   |||||||||||||||||||||    
T  17558890 aatgaatttcatattatctttttggctatatatgacccgtgcggcagcacgggtagacgatctagtt 17558824  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 38236375 - 38236310
Alignment:
Q  166 aatgaatttcagttaatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagt 231  Q
    |||||| ||||  ||||||||||||| |||||||||||||||   |||||||||||||||||||||    
T  38236375 aatgaagttcaactaatgtttttagctatatatgacccgtgctgccgcacgggtagacgatctagt 38236310  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 6923503 - 6923570
Alignment:
Q  166 aatgaatttcagttaatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagttt 233  Q
    |||||| ||||  |||| |||||||| |||||||||||||||    ||||||||||||||||||||||    
T  6923503 aatgaagttcaactaatatttttagctatatatgacccgtgctgctgcacgggtagacgatctagttt 6923570  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 51387177 - 51387129
Alignment:
Q  183 gtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagt 231  Q
    ||||||| | ||||||||||||||||   ||||||||||||||||||||    
T  51387177 gtttttaactatatatgacccgtgcggcagcacgggtagacgatctagt 51387129  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 16367864 - 16367919
Alignment:
Q  179 taatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagtttc 234  Q
    ||||||||| | | ||||||||||||||||   |||||||||||||||||||||||    
T  16367864 taatgttttaaactatatatgacccgtgcggcagcacgggtagacgatctagtttc 16367919  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 16349767 - 16349712
Alignment:
Q  179 taatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagtttc 234  Q
    ||||||||||| | ||||||||||||||||   |||||||| ||||||||||||||    
T  16349767 taatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagtttc 16349712  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 16222680 - 16222745
Alignment:
Q  166 aatgaatttcagttaatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagt 231  Q
    |||||| ||||  ||||||||||||| |||||||||  |||||   ||||||||||||||||||||    
T  16222680 aatgaagttcaactaatgtttttagctatatatgacatgtgcggcagcacgggtagacgatctagt 16222745  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 4082576 - 4082628
Alignment:
Q  179 taatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagt 231  Q
    ||||||||||| | ||||||||||||||||   |||||||| |||||||||||    
T  4082576 taatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagt 4082628  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 7853691 - 7853728
Alignment:
Q  194 tatatgacccgtgcgttcgcacgggtagacgatctagt 231  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  7853691 tatatgacccgtgcggtagcacgggtagacgatctagt 7853728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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