View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_low_6 (Length: 658)
Name: NF2701_low_6
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 13 - 643
Target Start/End: Complemental strand, 32717910 - 32717280
Alignment:
| Q |
13 |
aatatgacaacttaaccagaaaaacattggtcttaaacaatatgacaacttaacnnnnnnnnnnnncaatatgacaacatgaaattctgcaagaacttga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32717910 |
aatatgacaacttaaccagaaaaacattggtcttaaacaatatgacaacttaacaaaaacaaaaaacaatatgacaacatgaaattctgcaagaacttga |
32717811 |
T |
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| Q |
113 |
aaattaagaaactatattctaaaccacggtataaataccattggaagcaactattgaaattccaaatatttatgacaactaatcctcatcactacttcca |
212 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32717810 |
aaattaagaaactatattctaaaccacggtatacataccattggaagcaactattgaaattccaaatatttatgacaactaatcctcatcactacttcca |
32717711 |
T |
|
| Q |
213 |
tagcttaggcacaaagataacagtgcaccattagtatttgtagaacgtttgacattagaggtctctggtttcttgacaacagaaatcatcgccaaaggat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32717710 |
tagcttaggcacaaagataacagtgcaccattagtatttgtagaacgtttgacattagaggtctctggtttcttgacaacagaaatcatcgccaaaggat |
32717611 |
T |
|
| Q |
313 |
taggcttttgacgacggccaatcaattttccttgtttgtcagaatcatccaaaccggcttttgtcatagtgtcagtggctttttctgcaagatctttgga |
412 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||| |
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| T |
32717610 |
taggcttttgacgaccgccgatcaattttccttgtttgtcagaatcatccaaaccggcttttgtcagagtaccagcggctttttctgaaagatctttgga |
32717511 |
T |
|
| Q |
413 |
aattttttgcctcttcagattattattggatgtttcaccatgtctgtcacgaattctgctgatagaaacttcagaattattcgagaaaattgattttatc |
512 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32717510 |
aatttttcgcctcttcagattattattggatgtttcaccatgtctgtcacgaattctgctgatagaaacttcagaattattcgagaaaattgattttatc |
32717411 |
T |
|
| Q |
513 |
agtgcttcatcttcttctaccagccttatttccttgtctgctgccttacgttgcaaagcagcaagcattttatcaacactaacagttgcatgcttagact |
612 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32717410 |
agtgcttcatcttcttctaccagccttttctccttgtctgctgccttacgttgcaaggcagcaagcattttatcaacactaacagttgcatgcctagact |
32717311 |
T |
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| Q |
613 |
tcattgacttcatctcatccagtgcagcaag |
643 |
Q |
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| T |
32717310 |
tcattgacttcatctcatccagtgcagcaag |
32717280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 1843168 - 1843084
Alignment:
| Q |
342 |
ccttgtttgtcagaatcatccaaaccggcttttgtcatagtgtcagtggctttttctgcaagatctttggaaattttttgcctct |
426 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||| |||||| | |||||||| ||||||||||||||||| |
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| T |
1843168 |
ccttgtttgtcagaatcatccaaactggcttttgtcaaggtgtcagttgcttttcgaggaagatcttcggaaattttttgcctct |
1843084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 530
Target Start/End: Complemental strand, 1841151 - 1841112
Alignment:
| Q |
491 |
attcgagaaaattgattttatcagtgcttcatcttcttct |
530 |
Q |
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| T |
1841151 |
attcgagaaaattgattttatcagtgcttcatcttcttct |
1841112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 231
Target Start/End: Complemental strand, 1843973 - 1843813
Alignment:
| Q |
79 |
caatatgacaacatgaaattctgcaagaacttgaaaattaagaaactatattctaaaccacggtataaataccattggaagcaactattgaa-------- |
170 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| |||||| |||| |||| || ||| |||| | ||||||||||||||| ||||| |
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| T |
1843973 |
caatatgacaacatgaaatt-tgcaaaaacttgaaaactaagaatctatgttctgaatcacaatatacaatccattggaagcaactgttgaatacatagt |
1843875 |
T |
|
| Q |
171 |
-attccaaatatttatgacaactaatcctcatcactacttccatagcttaggcacaaagata |
231 |
Q |
| |
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|| |||| | ||||||| ||||| ||||| |||||||||||||||||| | |||| ||||| |
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| T |
1843874 |
catcccaactgtttatgaaaactattcctcgtcactacttccatagctttgacacagagata |
1843813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 611 - 643
Target Start/End: Complemental strand, 1838957 - 1838925
Alignment:
| Q |
611 |
cttcattgacttcatctcatccagtgcagcaag |
643 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
1838957 |
cttcattgacttcatctcatccagtgcagcaag |
1838925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 612
Target Start/End: Complemental strand, 1839254 - 1839186
Alignment:
| Q |
544 |
ccttgtctgctgccttacgttgcaaagcagcaagcattttatcaacactaacagttgcatgcttagact |
612 |
Q |
| |
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||||||| ||||| |||||||||| || ||||||||| | ||||||| |||||||||||| |||||| |
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| T |
1839254 |
ccttgtccgctgctgtacgttgcaacgccacaagcatttcagcaacactgacagttgcatgcctagact |
1839186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 29820902 - 29820986
Alignment:
| Q |
342 |
ccttgtttgtcagaatcatccaaaccggcttttgtcatagtgtcagtggctttttctgcaagatctttggaaattttttgcctct |
426 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||| || |||||| | |||||||| ||||||||||||||||| |
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| T |
29820902 |
ccttgtttgtcagaatcatccaagccggcttttgtcagggtgtcggttgcttttcgaggaagatcttcggaaattttttgcctct |
29820986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 544 - 612
Target Start/End: Original strand, 29822569 - 29822637
Alignment:
| Q |
544 |
ccttgtctgctgccttacgttgcaaagcagcaagcattttatcaacactaacagttgcatgcttagact |
612 |
Q |
| |
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||||||| |||||| |||||||||| || |||||||||| |||||||||||||||||||||| |||||| |
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| T |
29822569 |
ccttgtccgctgccgtacgttgcaacgccgcaagcatttcatcaacactaacagttgcatgcctagact |
29822637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 530
Target Start/End: Original strand, 29821494 - 29821533
Alignment:
| Q |
491 |
attcgagaaaattgattttatcagtgcttcatcttcttct |
530 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
29821494 |
attcgagaaaattgattttatcagtgcttcatcttcttct |
29821533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 29820101 - 29820245
Alignment:
| Q |
79 |
caatatgacaacatgaaattctgcaagaacttgaaaattaagaaactatattctaaaccacggtataaataccattggaagcaactattgaa-------- |
170 |
Q |
| |
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|||||||||||||||||||| ||||| || ||||||| || ||| |||| |||| || ||| |||| | ||||||||||||||| ||||| |
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| T |
29820101 |
caatatgacaacatgaaatt-tgcaaaaagttgaaaactaggaatctatgttctgaatcacaatatacaatccattggaagcaactgttgaatatatagt |
29820199 |
T |
|
| Q |
171 |
-attccaaatatttatgacaactaatcctcatcactacttccatag |
215 |
Q |
| |
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||||||| | ||||||||||||| ||||||||||||||||||||| |
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| T |
29820200 |
cattccaattgtttatgacaactattcctcatcactacttccatag |
29820245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 611 - 643
Target Start/End: Original strand, 29822777 - 29822809
Alignment:
| Q |
611 |
cttcattgacttcatctcatccagtgcagcaag |
643 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
29822777 |
cttcattgacttcatctcatccagtgcagcaag |
29822809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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