View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2701_low_9 (Length: 528)
Name: NF2701_low_9
Description: NF2701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2701_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 111 - 510
Target Start/End: Complemental strand, 570397 - 569998
Alignment:
| Q |
111 |
acttgtatagcttgtgcgggggcctgttttgaattaatatatgtgctaattcaaatgttgaacagagtaacatcaataacaatattaccactagagcttt |
210 |
Q |
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| T |
570397 |
acttgtatagcttgtgcgggggcctgttttgaattaatatatgtgctaattcaaatgttgaacagagtaacatcaataacaatattaccattagagcttt |
570298 |
T |
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| Q |
211 |
gactagataaaatggtagcattgaatatgggttgtacaatgatgaatttgggtagctttgtttgcatactcgagtcactagccaatattgagtgtttggt |
310 |
Q |
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| T |
570297 |
gactagataaaatggtagcattgaatatgggttgtacaatgatgaatttgggtagctttgtttgcatactcgagtcactagccaatattgagtgtttgtt |
570198 |
T |
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| Q |
311 |
tattaatttgttgaactaaagtgtcacttttctgccactaattttcgt----------ttgtagtcttttagtttctgtt-gactctagtttggtgttgt |
399 |
Q |
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| T |
570197 |
tattaatttgttgaactaaagtgtcacttttctgtcactaattttcgtttgttttcgtttgtagtcttttagtttctgttagactctagtttggtgttgt |
570098 |
T |
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| Q |
400 |
cttttgtgtggttctgctagaattaacttgatgatacataccttttattttctcatacaatgttttatgtgatatctttattggctcaacaagcaattca |
499 |
Q |
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| T |
570097 |
cttttgtgtggttctgctagaattaacttgatgataaataccttttattttctcatacaatattttatg-----------ttggctcaacaagcaattca |
570009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 570507 - 570469
Alignment:
| Q |
1 |
tttttagtatttttcactaatggaatatccatgaagtgg |
39 |
Q |
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| T |
570507 |
tttttagtatttttcactaatggaatatccatgaagtgg |
570469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 15102681 - 15102644
Alignment:
| Q |
2 |
ttttagtatttttcactaatggaatatccatgaagtgg |
39 |
Q |
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| T |
15102681 |
ttttagtctttttcattaatggaatatccatgaagtgg |
15102644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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