View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2702_high_6 (Length: 429)
Name: NF2702_high_6
Description: NF2702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2702_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 34378685 - 34378866
Alignment:
| Q |
10 |
aagaatatctgaaataaatgcctccattaaataaataataaatggcccaaaaatatttgaagcttttctttctatgtcgattagtgccactgcaagtgtc |
109 |
Q |
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| T |
34378685 |
aagaatatctgaaataaatgcctccattaaataaataataaatggcccaaaaatatttgaagcttttctttctatgtcgattagtgccactgcaagtgtc |
34378784 |
T |
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| Q |
110 |
catcaccgtcacgactacagtcacagagcactacattagccgcttaagtcatttcgatccaatttccttcaaaggtttccaa |
191 |
Q |
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| T |
34378785 |
catcaccgtcacgactacagtcacagagcactacattagccgcttaagtcatttcgatccaatttccttcaaaggtttccaa |
34378866 |
T |
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Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 34379007 - 34379080
Alignment:
| Q |
328 |
caggaatcaaatttcatcataatcattcttggtttcttcttcttcactatattac-aacatttttcagtcactt |
400 |
Q |
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| T |
34379007 |
caggaatcaaatttcatcataatcattcttggtttcttcttcttcactatattacaaacatttttcagtcactt |
34379080 |
T |
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