View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2702_low_1 (Length: 244)

Name: NF2702_low_1
Description: NF2702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2702_low_1
NF2702_low_1
[»] chr8 (9 HSPs)
chr8 (1-242)||(2028350-2028591)
chr8 (34-242)||(1950435-1950646)
chr8 (36-238)||(10767529-10767731)
chr8 (37-194)||(2046366-2046526)
chr8 (37-194)||(2036989-2037149)
chr8 (32-182)||(2050187-2050337)
chr8 (32-182)||(2054193-2054346)
chr8 (32-143)||(2032985-2033099)
chr8 (52-163)||(2057169-2057280)
[»] chr4 (1 HSPs)
chr4 (32-126)||(48908694-48908788)
[»] chr2 (4 HSPs)
chr2 (58-152)||(28786134-28786228)
chr2 (98-146)||(28713345-28713393)
chr2 (98-143)||(28736619-28736664)
chr2 (98-143)||(28743245-28743290)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2028591 - 2028350
Alignment:
Q  1 ttgagcacataaattgtatatgtatgcatacaaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaag 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2028591 ttgagcacataaattgtatatgcatgcatacaaacatacctgcatacaacaggaaaatcttctggtttgggagtatcaggagccaaggaacaagtacaag 2028492  T
Q  101 tatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactcctttttagcatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2028491 tatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaataaatgatccatgcaaatctcttgtataaaactcctttttagcatc 2028392  T
Q  201 tgtttccatctcatgaaacctcttcacaccatccttcatctc 242  Q
    ||| ||||||||||||||||||||||||||||||||||||||    
T  2028391 tgtctccatctcatgaaacctcttcacaccatccttcatctc 2028350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 1950435 - 1950646
Alignment:
Q  34 acatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctataca 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  1950435 acatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaagtaacaagcacaagtatccctccaattgagtgctggtgagctataca 1950534  T
Q  134 aatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaa---actcctttttagcatctgtttccatctcatgaaacctcttcacacc 230  Q
    |||||||||||||||||||||||||||||  ||   ||||| |||| ||||   ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1950535 aatcaaaattgcttttgtaaataaatgatttatttctatcttttgtgtaaaagtactcctttttagcatctgtatccatctcatgaaacctcttcacacc 1950634  T
Q  231 atccttcatctc 242  Q
    ||||||||||||    
T  1950635 atccttcatctc 1950646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 10767731 - 10767529
Alignment:
Q  36 atacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaa 135  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||| | |    
T  10767731 atacctgcatactacaggaatatcttctggtttgggagtatcaggagccaagtaacatgtaaaagtatccctccaattaagtgctggtgagctataaata 10767632  T
Q  136 tcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactcctttttagcatctgtttccatctcatgaaacctcttcacaccatcct 235  Q
    ||||| || || ||||||||||| |||  |||  ||||||||||||| || || |||||  | ||||| |||  ||||| ||||||||| |||||||| |    
T  10767631 tcaaagttactattgtaaataaaggatttatgtctatctcttgtatacaaatcttttttgacttctgtatcctgctcataaaacctcttaacaccatctt 10767532  T
Q  236 tca 238  Q
    |||    
T  10767531 tca 10767529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 194
Target Start/End: Complemental strand, 2046526 - 2046366
Alignment:
Q  37 tacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctataca 133  Q
    ||||||||||| |||||||  |||| ||||||| ||||||||||   ||||||| |||||| | ||||||| ||||||||||||||||||| |||||| |    
T  2046526 tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 2046427  T
Q  134 aatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactccttttt 194  Q
     |||| ||||||| ||||||||||| |||| || |||||||||||||||||| || |||||    
T  2046426 tatcataattgctattgtaaataaaagatctattcatatctcttgtataaaaatctttttt 2046366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 194
Target Start/End: Complemental strand, 2037149 - 2036989
Alignment:
Q  37 tacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctataca 133  Q
    ||||||||||| |||||||  |||| ||||||  ||||||||||   ||||||| |||||| | ||||||| ||||||||||||||||||| |||||| |    
T  2037149 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 2037050  T
Q  134 aatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactccttttt 194  Q
     |||| ||||||| ||||||||||| |||| || |||||||||||||||||| || |||||    
T  2037049 tatcataattgctattgtaaataaaagatctattcatatctcttgtataaaaatctttttt 2036989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 2050337 - 2050187
Alignment:
Q  32 aaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctata 131  Q
    ||||||||||||| ||  | |||||||||| ||||||||||||||||||||||||| |||| | | || ||||||||||||||||||| || ||||||||    
T  2050337 aaacatacctgcacactgcgggaaaatcttctggtttgggagtatcaggagccaagtaacacgcaaaactatccctccaattgagtgccggagagctata 2050238  T
Q  132 caaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtata 182  Q
     | ||||||||| || || |||| ||| |||| || |||||||||||||||    
T  2050237 aatatcaaaattactattataaacaaaggatctattcatatctcttgtata 2050187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 2054346 - 2054193
Alignment:
Q  32 aaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagct 128  Q
    |||||||||||||||| |||||||| |||| ||||||| ||||||||||   |||||||  ||||  | || ||||| |||||||||||||||| |||||    
T  2054346 aaacatacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagct 2054247  T
Q  129 atacaaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtata 182  Q
    ||| | ||||| |||||| ||||||||||| ||||  |||||||||||||||||    
T  2054246 ataaatatcaacattgctattgtaaataaaggatctctgcatatctcttgtata 2054193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 2033099 - 2032985
Alignment:
Q  32 aaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagct 128  Q
    |||||||||||||||| |||||||| |||||||||||| ||||||||||   ||||||| ||||  || || ||||||||||||||||||||||||||||    
T  2033099 aaacatacctgcataccacaggaaactcttgtggtttgagagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctggtgagct 2033000  T
Q  129 atacaaatcaaaatt 143  Q
    ||| | |||||||||    
T  2032999 ataaatatcaaaatt 2032985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 2057280 - 2057169
Alignment:
Q  52 ggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgt 151  Q
    |||||||||| |||||| |||||||||||||||||| ||||| || || ||||||||||||||||||| || |||||||| | ||||| |||||| ||||    
T  2057280 ggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaactatccctccaattgagtgccggagagctataaatatcaacattgctattgt 2057181  T
Q  152 aaataaatgatc 163  Q
    ||| ||| ||||    
T  2057180 aaacaaaggatc 2057169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 48908694 - 48908788
Alignment:
Q  32 aaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgag 126  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |||||||||    
T  48908694 aaacatacctgcatactagaggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgagcgctggtgag 48908788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 28786134 - 28786228
Alignment:
Q  58 tcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgta 152  Q
    ||||||||||| |||| || |||||||||||||||   | |||||||||||||||||||||||| ||| ||||| | || ||||||||| |||||    
T  28786134 tcttgtggtttaggagcattaggagccaaggaacacacaaaagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgta 28786228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 28713345 - 28713393
Alignment:
Q  98 aagtatccctccaattgagtgctggtgagctatacaaatcaaaattgct 146  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  28713345 aagtatccctccaattaagtgctggtgatctatacaaatcaaaattgct 28713393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 28736619 - 28736664
Alignment:
Q  98 aagtatccctccaattgagtgctggtgagctatacaaatcaaaatt 143  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  28736619 aagtatccctccaattaagtgctggtgaactatacaaatcaaaatt 28736664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 28743245 - 28743290
Alignment:
Q  98 aagtatccctccaattgagtgctggtgagctatacaaatcaaaatt 143  Q
    |||||||||||||||| || |||||||| |||||||||||||||||    
T  28743245 aagtatccctccaattaagcgctggtgaactatacaaatcaaaatt 28743290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University