View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2702_low_14 (Length: 328)

Name: NF2702_low_14
Description: NF2702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2702_low_14
NF2702_low_14
[»] chr2 (1 HSPs)
chr2 (6-300)||(34105179-34105473)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 6 - 300
Target Start/End: Complemental strand, 34105473 - 34105179
Alignment:
Q  6 agaagcaaaggcaccaaaggaaaagacatcacagtttcttcaatctatttcatgtcacactaatgattgatcaagcacatacaatttcatgtttttacac 105  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34105473 agaaacaaagacaccaaaggaaaagacatcacagtttcttcaatctatttcatgtcacactaatgattgatcaagcacatacaatttcatgtttttacac 34105374  T
Q  106 aatagtagtatcaactaaacagaaatgtaaactaattagttctatcaacttagtaacttgaaatataagttaaatattggagctcaatgtttgttgtgat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34105373 aatagtagtatcaactaaacagaaatgtaaactaattagttctatcaacttagtaacttgaaatataagttaaatattggagctcaatgtttgttgtgat 34105274  T
Q  206 gatgtgatcccccgcacccaaatgggagaataacctctaaaacagtcgaaaggctacatctacatcaaagagtataatataatacagacggtatt 300  Q
    | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34105273 ggtgtgatctcccgcacccagatgggagaataacctctaaaacagtcgaaaggctacatctacatcaaagagtataatataatacagacggtatt 34105179  T

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