View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2702_low_16 (Length: 304)
Name: NF2702_low_16
Description: NF2702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2702_low_16 |
 | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 41379780 - 41379906
Alignment:
| Q |
50 |
ggcaaggtatgggtgatcgaattgaaagtgatgaaacaaatcaaacagatgaaccttat---gaggatgagatgtctaatgtaaatggtgtgatagaagt |
146 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41379780 |
ggcaaagtatgggtgatcgaattgaaagtgatgaaacaaatcaaacagatgaaccgtatcaggaggatgagatgtctaatgtagatggtgtgatagaagt |
41379879 |
T |
|
| Q |
147 |
tgagccttttagtcgcctttttaatgg |
173 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41379880 |
tgagccttttagtcgcctttttaatgg |
41379906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 11710 - 11820
Alignment:
| Q |
66 |
tcgaattgaaagtgatgaaacaaatcaaacagatgaaccttat---gaggatgagatgtctaatgtaaatggtgtgatagaagttgagccttttagtcgc |
162 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11710 |
tcgaattgaaagtgctgaaacaaatcaaatagatgaaccgtatcaggaggatgagatgtctaatgtagatggtgtgatagaagttgagccttttagtcgc |
11809 |
T |
|
| Q |
163 |
ctttttaatgg |
173 |
Q |
| |
|
||||||||||| |
|
|
| T |
11810 |
ctttttaatgg |
11820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 4028477 - 4028521
Alignment:
| Q |
247 |
tcggaaagtctctcacttgatttggttaacaacagtttggtgcat |
291 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4028477 |
tcggaaagtctctcacttaatttggttaacaacagtttggtgcat |
4028521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University