View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2702_low_1_N (Length: 547)
Name: NF2702_low_1_N
Description: NF2702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2702_low_1_N |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 185 - 445
Target Start/End: Complemental strand, 28536317 - 28536057
Alignment:
| Q |
185 |
tatcctcgtgttaaattacaattgagagaatgcattcccccacattttgcacctatgtggctgctttaatcttcaaaactacatttatttctttatggta |
284 |
Q |
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| T |
28536317 |
tatcctcgtgttaaattacaattgagagaatccattcccccacattttgcacctatgtggctgctttaatcttcaaaactacatttatttctttatggta |
28536218 |
T |
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| Q |
285 |
tgttcggttagtagtctagcatgtatttgcaaggtagctgcctggtctagtacagatgttcaatatatactctctgttaagtcctagacattgtttggat |
384 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536217 |
tgttcggttagtagtctaacatgtatttgcaaggtagctgcctggtctagtacagctgttcaatatatactctctgttaagtcctagacattgtttggat |
28536118 |
T |
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| Q |
385 |
agaatcttatttgcctgaccacaattctgttgctgttatagactgcaatgttttaatgtgt |
445 |
Q |
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| T |
28536117 |
agaatcttatttgcctgaccacaattctgttgctgttatagactgcaatgttttaatgtgt |
28536057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 28536564 - 28536380
Alignment:
| Q |
1 |
tccttcttgctttctccgcacgctcaacctcagccgtttcatctatcaaccacacattatcatactctcgagtctggtttttggttttgaaatttcagag |
100 |
Q |
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| T |
28536564 |
tccttcttgcgttcttcgcacgctcaacgtcagccgtttcatctatcaaccacacattatcatactctcgagtctggtttttggttttgaaatttcagag |
28536465 |
T |
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| Q |
101 |
cattactttatactgatgaaatggattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattcatgaat |
185 |
Q |
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| T |
28536464 |
cattactttatactgatgaaatgaattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattcatgaat |
28536380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 54492156 - 54492190
Alignment:
| Q |
130 |
ctcatgtgtaatttacacatgagaaggtaaagtgt |
164 |
Q |
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| T |
54492156 |
ctcatgtgtaattttcacatgagaaggtaaagtgt |
54492190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 17429155 - 17429217
Alignment:
| Q |
118 |
gaaatggattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattca |
180 |
Q |
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| T |
17429155 |
gaaatggattctctcatgtgtaatttactcatgagatactaaagtgtgatctcttaccattca |
17429217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 42971534 - 42971584
Alignment:
| Q |
130 |
ctcatgtgtaatttacacatgaga-aggtaaagtgtcatctttcaccattc |
179 |
Q |
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| T |
42971534 |
ctcatgtgtaatttttacatgagagaggtaaagtgtcatctctcaccattc |
42971584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 49655326 - 49655370
Alignment:
| Q |
136 |
tgtaatttacacatgagaaggtaaagtgtcatctttcaccattca |
180 |
Q |
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| T |
49655326 |
tgtaatttacacataagagagtaaagtgtcatctctcaccattca |
49655370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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