View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2702_low_22 (Length: 280)

Name: NF2702_low_22
Description: NF2702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2702_low_22
NF2702_low_22
[»] chr6 (4 HSPs)
chr6 (47-267)||(7564568-7564788)
chr6 (47-96)||(1442096-1442145)
chr6 (51-97)||(176352-176398)
chr6 (47-87)||(370782-370822)
[»] chr2 (3 HSPs)
chr2 (47-92)||(6538848-6538893)
chr2 (47-86)||(7160752-7160791)
chr2 (47-86)||(7168688-7168727)
[»] chr4 (2 HSPs)
chr4 (47-87)||(22672124-22672164)
chr4 (47-85)||(55419796-55419834)
[»] chr3 (3 HSPs)
chr3 (47-87)||(2442053-2442093)
chr3 (47-87)||(4142131-4142171)
chr3 (47-87)||(4157941-4157981)
[»] chr7 (1 HSPs)
chr7 (47-86)||(3927073-3927112)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 47 - 267
Target Start/End: Complemental strand, 7564788 - 7564568
Alignment:
Q  47 gaaggattatggaaataaggattcttggactaaattgttcagtgttccattcacagaattcattgattatttctatgcacgtctgctttttatttatgag 146  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||| | |||||||||| ||||||    
T  7564788 gaaggattatggaaacaaggattcttggactaaattgttcagtgttccattcaaagaattcagtgataattgctatgcacctgtgctttttatctatgag 7564689  T
Q  147 gaggatgaccaagtgttgcttgacttttgtggtaagttatatgtttacaattataagaatggtaccgtaaagatttcggggattcaaaatgtcgctttta 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7564688 gaggatgaccaagtgttgcttgacttttgtggtaagttatatgtttacaattataagaatggtaccgtaaagatttcggggattcaaaatctcgctttta 7564589  T
Q  247 ccgatttctcgtctaatgtct 267  Q
    |||||||||| ||||||||||    
T  7564588 ccgatttctcctctaatgtct 7564568  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 1442145 - 1442096
Alignment:
Q  47 gaaggattatggaaataaggattcttggactaaattgttcagtgttccat 96  Q
    |||||||||||||| ||| |||||||||||||||||||||| ||||||||    
T  1442145 gaaggattatggaattaaagattcttggactaaattgttcactgttccat 1442096  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 176352 - 176398
Alignment:
Q  51 gattatggaaataaggattcttggactaaattgttcagtgttccatt 97  Q
    |||||||||||||| |||||||||||||||||||||| | |||||||    
T  176352 gattatggaaataaagattcttggactaaattgttcactcttccatt 176398  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 370822 - 370782
Alignment:
Q  47 gaaggattatggaaataaggattcttggactaaattgttca 87  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  370822 gaagaattatggaaataaagattcttggactaaattgttca 370782  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 6538848 - 6538893
Alignment:
Q  47 gaaggattatggaaataaggattcttggactaaattgttcagtgtt 92  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||    
T  6538848 gaaggagtatggaaataaagattcttggactaaattgttcagtgtt 6538893  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 7160791 - 7160752
Alignment:
Q  47 gaaggattatggaaataaggattcttggactaaattgttc 86  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  7160791 gaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 7168727 - 7168688
Alignment:
Q  47 gaaggattatggaaataaggattcttggactaaattgttc 86  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  7168727 gaaggaatatggaaataacgattcttggactaaattgttc 7168688  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 22672164 - 22672124
Alignment:
Q  47 gaaggattatggaaataaggattcttggactaaattgttca 87  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  22672164 gaaggaatatggaaataaggaatcttggactaaattgttca 22672124  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 55419796 - 55419834
Alignment:
Q  47 gaaggattatggaaataaggattcttggactaaattgtt 85  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  55419796 gaaggtttatggaaataaagattcttggactaaattgtt 55419834  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 2442053 - 2442093
Alignment:
Q  47 gaaggattatggaaataaggattcttggactaaattgttca 87  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  2442053 gaaggagtatggaaataaagattcttggactaaattgttca 2442093  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 4142171 - 4142131
Alignment:
Q  47 gaaggattatggaaataaggattcttggactaaattgttca 87  Q
    |||||| ||||||||||| || |||||||||||||||||||    
T  4142171 gaaggaatatggaaataaagagtcttggactaaattgttca 4142131  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 4157981 - 4157941
Alignment:
Q  47 gaaggattatggaaataaggattcttggactaaattgttca 87  Q
    |||||| ||||||||||| || |||||||||||||||||||    
T  4157981 gaaggaatatggaaataaagagtcttggactaaattgttca 4157941  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 3927073 - 3927112
Alignment:
Q  47 gaaggattatggaaataaggattcttggactaaattgttc 86  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  3927073 gaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

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