View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2702_low_25 (Length: 249)
Name: NF2702_low_25
Description: NF2702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2702_low_25 |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 23224674 - 23224914
Alignment:
| Q |
9 |
accacagatacttttgacttgactattgttgttgatctatacctaaaagtcttgcagcatactatactttcaattctttgtttaaaactgaaattctggc |
108 |
Q |
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| T |
23224674 |
accacagatacttttgacttgactattgttgttgctctatgcctagaagtcttgcagcatactatactttcaattctctgtttaaaactgaaattttggc |
23224773 |
T |
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| Q |
109 |
acgtacagaaagatgttgaacatgatgtcaggacaagcagaatgtcgagaaggaaaacatcgtgacacaacaagataacaaataacaacttaaagacaaa |
208 |
Q |
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| T |
23224774 |
acgtacagaaagttgtcgaacatgatgtcaggacaagcagaatgtcgagaaggaaaacatcatgacaacacaagataacaaatagcaacttaaagataaa |
23224873 |
T |
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| Q |
209 |
agctgaaagtaaatgacacaagttagttgttaacccagttc |
249 |
Q |
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| T |
23224874 |
agctgaaagtaaatgacacaagttatttgttaacccagttc |
23224914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 27598603 - 27598663
Alignment:
| Q |
186 |
acaaataacaacttaaagacaaaagctgaaagtaaatgacacaagttagttgttaacccag |
246 |
Q |
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| T |
27598603 |
acaaataacaaattaaaaataaaagccgaaagcaaatgacacacgttatttgttaacccag |
27598663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 97 - 248
Target Start/End: Original strand, 5298995 - 5299151
Alignment:
| Q |
97 |
tgaaattctggcacgtacagaaagatgttgaacatgatgtcaggacaagcagaatgtcgagaagga-----aaacatcgtgacacaacaagataacaaat |
191 |
Q |
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| T |
5298995 |
tgaaattattgcatgtaaagaaagatgtcgaacatgatgtcagaacaagcagaatgtcgagaaggatgtcaagacattgtgacaacataagataacaaat |
5299094 |
T |
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| Q |
192 |
aacaacttaaagacaaaagctgaaagtaaatgacacaagttagttgttaacccagtt |
248 |
Q |
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| T |
5299095 |
aacaacttaaagataaaagctgaaagtaaatggcacaagttattcgttaacccagtt |
5299151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 11865352 - 11865268
Alignment:
| Q |
165 |
acatcgtgacacaacaagataacaaataacaacttaaagacaaaagctgaaagtaaatgacacaagttagttgttaacccagttc |
249 |
Q |
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| T |
11865352 |
acatcgtgacaacacaaaataacaaataacaacttaaagataaaggcaaaaagtaaaaggcacaagttatttgttaacccagttc |
11865268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 19564777 - 19564839
Alignment:
| Q |
186 |
acaaataacaacttaaagacaaaagctgaaagtaaatgacacaagttagttgttaacccagtt |
248 |
Q |
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| T |
19564777 |
acaaataacaacttaaagataaaggcagaaagtaaaaggcacgggttatttgttaacccagtt |
19564839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 17395490 - 17395533
Alignment:
| Q |
165 |
acatcgtgacacaacaagataacaaataacaacttaaagacaaa |
208 |
Q |
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| T |
17395490 |
acatcgtgacaacacaaaataacaaataacaacttaaagacaaa |
17395533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 8941240 - 8941292
Alignment:
| Q |
186 |
acaaataacaacttaaagacaaaagctgaaagtaaatgacacaagttagttgt |
238 |
Q |
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| T |
8941240 |
acaaataacaaactaaagataaaagctgaaagtaaattgcacaagttatttgt |
8941292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 10374980 - 10374915
Alignment:
| Q |
183 |
ataacaaataacaacttaaagacaaaagctgaaagtaaatgacacaagttagttgttaacccagtt |
248 |
Q |
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| T |
10374980 |
ataacaattaacaacttaaagtaaattgcagaaagtaaatgacacaaggtattagttaacccagtt |
10374915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 1103546 - 1103463
Alignment:
| Q |
165 |
acatcgtgacacaacaagataacaaataacaacttaaagacaaaagctgaaagtaaatgacacaagttagttgttaacccagttc |
249 |
Q |
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| T |
1103546 |
acatcgtgacaacacaa-ataacaaataactaatagtagataaaagctgaaagtaaaaggcacaagttattttttaacccagttc |
1103463 |
T |
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