View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2702_low_5 (Length: 438)
Name: NF2702_low_5
Description: NF2702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2702_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 30 - 438
Target Start/End: Original strand, 4028429 - 4028835
Alignment:
| Q |
30 |
agtagatacctttctattgttcaattttctttgcaaaggaaagaagggtcggaaagtctctcacttgatttggttaacaacagtttggtgcattttgttg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4028429 |
agtagatacctttctattgttcaattttctttgcaaaggaaagaagggtcggaaagtctctcacttaatttggttaacaacagtttggtgcattttgttg |
4028528 |
T |
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| Q |
130 |
gaatgccatgatatcattttcaacagaaaagtcgctaatgttcttgcggtggttggtcgaattaagcgaatatcatggtcttggttcatttgcatggagt |
229 |
Q |
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| T |
4028529 |
gaatgccatgatatcattttcaacagaaaagtcgctaatgttcttgcggtggttggtcgaattaagcgaatatcatggtcttggttcatttgcatggagt |
4028628 |
T |
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| Q |
230 |
gtaggaataaaaatttagtattatcggattggtggactaatccacttgttggtctttaaactgttctgcttcttgacagagagtcattatcggttgcttt |
329 |
Q |
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| T |
4028629 |
gtaggaataaaaatttagtattatcggattggtggactaatccacttgttggtctttaaactgttctgct--ttgacagagagtcattatcggttgcttt |
4028726 |
T |
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| Q |
330 |
ggattttctgcgtttggagcctcgatgaccagctgttgggcagtatactaaatggcattttgatatttctgttgctactatttgttacattttgtagggg |
429 |
Q |
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| T |
4028727 |
ggattttctgcgtttggagcctcgatgaccagctgttggacagtatactaaatggcattttgatatttctgttgctactatttgttacattttgtagggg |
4028826 |
T |
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| Q |
430 |
aaacttagc |
438 |
Q |
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| T |
4028827 |
aaacttagc |
4028835 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 26619051 - 26619007
Alignment:
| Q |
30 |
agtagatacctttctattgttcaattttctttgcaaaggaaagaa |
74 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
26619051 |
agtagataattttctattgttcaatttgttttgcaaaggaaagaa |
26619007 |
T |
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