View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_high_12 (Length: 511)
Name: NF2703_high_12
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 12614938 - 12615430
Alignment:
| Q |
1 |
gaggagaatgaacatcagatcttgagagaaacacacttcaatgtcttaaatcagtactatctgaccaacccaggtggcttaatgcaagagtggattaatt |
100 |
Q |
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| T |
12614938 |
gaggagaatgaacatgagatcttgagaaaaacacacttcaatgtcctaaatc-gcactatctaaccaacccaagtggcttaatgcaagagtggattaatt |
12615036 |
T |
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| Q |
101 |
ataactagagtgtattgtaactaactatatactactgcatactatttaagcctcttaactgaatcctaacaacatatatatgtcaattgcttgcatggca |
200 |
Q |
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| T |
12615037 |
gtaactagagtgttttgtaactaactatatactactgcatactatttaagcctcttagctgaatcctaacaacatatatatgtcaattgcttgcatggca |
12615136 |
T |
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| Q |
201 |
a-ttcagttaattagtttgatagtaagttccttggatctcaagtaacgacatcttcattatgtttttacagtccccccagctagagcttggtatacatat |
299 |
Q |
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| T |
12615137 |
aattcagttaattagtttgatagtaagttccttggatctcaagtaacgacatcttcattatgtttttacagtccccccagctagagcttggtatacatat |
12615236 |
T |
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| Q |
300 |
ctaccatgtctcgcttggggaagaaattggttgcttgttcactacttgaaattggttgcaatttgatggcgccttctggaactttgccatgaacaaaatg |
399 |
Q |
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| T |
12615237 |
ctaccatgtctcgcttggtgaagaaattagctgcttgttcactacttgaaattggttgcaatttgatggtgccttctggaactttgccatgaacaaaatg |
12615336 |
T |
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| Q |
400 |
gtagtttatccatatgtttggttctttcatggaacataggattaacagttatatgtaagacactttgattgtcataattcaacactagaactct |
493 |
Q |
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| T |
12615337 |
gtagtttatccatatgtttggttctttcatggaacataggattaacagttatatgtaagacactttgattgtcataattcaacattagaactct |
12615430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 102 - 270
Target Start/End: Complemental strand, 12582196 - 12582029
Alignment:
| Q |
102 |
taactagagtgtattgtaactaactatatactactgcatactatttaagcctcttaactgaatcctaacaacatatatat--gtcaattgcttgcatggc |
199 |
Q |
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| T |
12582196 |
taactagaatgcagtgtaactaattacatactactgcgtactatctaagcctcgaaactgaatcttagcaacctctataaccgtcaatcgcttgtgtggc |
12582097 |
T |
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| Q |
200 |
aa-ttcagttaattagtttgatagtaagttccttggatctcaagtaacgacatcttcattatgtttttacag |
270 |
Q |
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| T |
12582096 |
aaattcagtta----gtttgatagtaagttacttggatctcaagtaactacatcttcattatgttttaacag |
12582029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 399
Target Start/End: Complemental strand, 12581943 - 12581864
Alignment:
| Q |
319 |
gaagaaattggttgcttgttcactacttgaaattggttgcaatttgatggcgccttctggaactttgccatgaacaaaatg |
399 |
Q |
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| T |
12581943 |
gaagaaatcagttgcttgttcactacttg-aattgatagcaatctgatggtgccttcttgaactttctcacgaacaaaatg |
12581864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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